Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I22
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    29   0.74 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   3.0  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   6.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   9.1  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 44  TAPSASNMADAPPEVSSS 97
           T PSASNMA+APP V ++
Sbjct: 681 TGPSASNMANAPPSVRNN 698


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +2

Query: 44  TAPSASNMADAPPEVSSSTWAACTMPLRAIRCYASQTSLPAAALQIPNIRATL--VVASS 217
           T  ++  ++ +    +SS +++ ++P+  +   +S + +P+++  I    +T   V+ SS
Sbjct: 71  TNTTSGQLSISSSSSTSSEYSSSSIPITTVS--SSDSFIPSSSQTISASSSTTDNVIVSS 128

Query: 218 SIETAFSSAMCSTIF 262
           SI +  SS   STI+
Sbjct: 129 SISSTVSSTPVSTIY 143


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 358 SRAPIIL*SFGSPREGALFS*NTSGKTSPPVSEDSRAHSGRERR 227
           S  P+I     S  E    S +T G+TS PV   S AH G +++
Sbjct: 58  SENPVIQNISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKK 101


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 346  LGLEKCSPEKADSSVRQNREAKGCFTGGDTGAVLAFGTPNGXS 474
            LG  + +  +   ++  N +A+G F G D G V ++  P+  S
Sbjct: 2501 LGRNRVATRQNIITITPNGQARGIFAGDDKGQVFSWMLPDTTS 2543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,214
Number of Sequences: 5004
Number of extensions: 48310
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)