Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I22
(966 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 47 3e-05
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 44 2e-04
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 32 0.60
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 31 1.0
06_01_0874 - 6702059-6702733,6703146-6703521,6703677-6703770,670... 29 5.5
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 29 7.3
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12... 29 7.3
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 28 9.7
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 28 9.7
08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988... 28 9.7
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 46.8 bits (106), Expect = 3e-05
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +1
Query: 94 LNVGGVHYATTRDTLL-REPDF---AARRRASDSEHPRDARGRIFFDRDGVLFRYVLDYL 261
LN+GG Y TT DTL R+P AA A+ P G +F DRDG LFR+VL++L
Sbjct: 7 LNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLNWL 66
Query: 262 Q 264
+
Sbjct: 67 R 67
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 43.6 bits (98), Expect = 2e-04
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Frame = +1
Query: 94 LNVGGVHYATTRDTLL-REPD-FAARRRASDSEHPRDA-RGRIFFDRDGVLFRYVLDYLQ 264
LN+GG YATT +TL REP A + PR G +F DRDG FR+VL++L+
Sbjct: 15 LNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPDTGMVFVDRDGKHFRHVLNWLR 74
Query: 265 -RRVDSFCRXCFKKTKRLXEGNQNFKELLGLEKC 363
V +++ R E + +LLGL C
Sbjct: 75 DGAVPDMSESEYQQLLREAE----YYQLLGLADC 104
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 32.3 bits (70), Expect = 0.60
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 146 SQTSLPAAALQIPNIRATLVVA--SSSIETAFSSAMCSTIFRDGW---TRFAGXVSRKQS 310
SQT P+ + +P + ++L+ A SSS+ AFS+ C + + TRF G KQ
Sbjct: 115 SQTG-PSQHVVLPLVSSSLMQALVSSSLMQAFSAKPCIVLIARSYPCKTRFRGCFIGKQK 173
Query: 311 AFXRGTKTLKNYWGSRNAVPRK 376
+ L+ SR A+PR+
Sbjct: 174 SRRTARVPLERSEESRAAIPRR 195
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 300 LETXPAKRVHPSLKIVEHIAEENAVSIEEDA 208
L P+K VHP+ + H+ EE+ V++EE+A
Sbjct: 213 LSGEPSKHVHPTKESSVHVQEEDNVNLEENA 243
>06_01_0874 -
6702059-6702733,6703146-6703521,6703677-6703770,
6705455-6705833
Length = 507
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 80 PEVSSSTWAACTMPLRAIRCYASQTSLPAAALQIPNIRATLVVASSSIETAFSSAMCSTI 259
PE S + W A T + A+ +S ++ Q+ + VV + S+ T +SSA+ +
Sbjct: 42 PEKSGTVWTA-TAHIVALLIGSSVLAVAWTFAQLGWVAGPAVVVALSVVTYYSSALLADC 100
Query: 260 FRD 268
+RD
Sbjct: 101 YRD 103
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 28.7 bits (61), Expect = 7.3
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +2
Query: 176 QIPNIRATLVVASSSIETAFSSAMCSTIFRDGWTRFAGXVSRKQSAFXRGTKTLKNYWGS 355
+IP R + V +SSI T+ + ++ R + ++S R + L++
Sbjct: 726 RIPYFRFKIFVGASSIGTSINPQFIASFASAAGKRCNQDLDSEESDPERTWQRLRSTGIF 785
Query: 356 RNAVP----RKQIPPSAKIAKRRDASRVG 430
R+A+P R P K+A+RR SR+G
Sbjct: 786 RDAIPHPYERIGHPMHVKVAQRRFESRLG 814
>02_01_0020 -
127572-127637,127760-127819,127903-128004,128099-128194,
128649-128756,128849-128899,129018-130118
Length = 527
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 163 RRRASDSEHPRDARGR-IFFDRDGVLFRYVLDYLQRRVDSFCRXCFKKTKRL 315
RRRA + P D+ D D RY D ++RRVD F R C + ++ L
Sbjct: 108 RRRAKEEAAPDDSFWEPTDSDSDEEDERYTPDAIKRRVDEFERKCNRHSELL 159
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 387 RPPKSRSEGMLHGWGYRGSFGIRNAER 467
+P +SR+ +HG GY+ S G+R+ ++
Sbjct: 27 QPARSRTTTTIHGGGYQKSTGVRSHQK 53
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 28.3 bits (60), Expect = 9.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 226 DGVLFRYVLDYLQRRVDSFCRXCFKKTKRLXEGNQNF-KELLGLEKCSPEKADSSVRQNR 402
DGVL+R + QRR S + TK+L + NQ+ +EL L++ E R
Sbjct: 161 DGVLYRAARE--QRRSSSLLPRTVRATKKLLQTNQHLAQELQRLKRMVEEANQRKQRYTA 218
Query: 403 EAKG 414
A G
Sbjct: 219 AAPG 222
>08_02_0947 +
22897552-22897614,22898291-22898513,22898599-22898892,
22899346-22900598
Length = 610
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 221 IETAFSSAMCSTIFRDGWTRFAGXVS 298
+E + SA+C+ I R GW FA V+
Sbjct: 374 LEATYVSAVCTKILRGGWVPFAVSVA 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,832,300
Number of Sequences: 37544
Number of extensions: 374410
Number of successful extensions: 1250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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