Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I22
(966 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55000.2 68418.m06850 potassium channel tetramerisation domai... 46 3e-05
At5g55000.1 68418.m06849 potassium channel tetramerisation domai... 46 3e-05
At4g22860.1 68417.m03302 expressed protein 30 2.0
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 30 2.6
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 30 2.6
At1g78970.2 68414.m09208 lupeol synthase (LUP1) / 2,3-oxidosqual... 30 2.6
At1g78970.1 68414.m09207 lupeol synthase (LUP1) / 2,3-oxidosqual... 30 2.6
>At5g55000.2 68418.m06850 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 298
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 88 LELNVGGVHYATTRDTL-LREPD--FAARRRASDSEHPRDARGRIFFDRDGVLFRYVLDY 258
+ LN+GG + TT DTL +REPD AA + +G +F DRDG FR++L++
Sbjct: 11 VRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHILNW 70
Query: 259 LQ 264
L+
Sbjct: 71 LR 72
>At5g55000.1 68418.m06849 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 290
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 88 LELNVGGVHYATTRDTL-LREPD--FAARRRASDSEHPRDARGRIFFDRDGVLFRYVLDY 258
+ LN+GG + TT DTL +REPD AA + +G +F DRDG FR++L++
Sbjct: 11 VRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHILNW 70
Query: 259 LQ 264
L+
Sbjct: 71 LR 72
>At4g22860.1 68417.m03302 expressed protein
Length = 509
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 115 YATTRDTLLREPDFAARRRASDSEHPRDAR 204
+A T+ T+ +EPDFA +RA H DA+
Sbjct: 249 HARTKITIPQEPDFATSQRAHRIRHKNDAK 278
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 314 FXRGTKTLKNYWGSRNAVPRKQIPPSAKIAKRRD 415
F G L++Y+GSR VPRK +P +R D
Sbjct: 467 FQAGVLLLQHYFGSRCFVPRKLLPEKYSYYRRLD 500
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 314 FXRGTKTLKNYWGSRNAVPRKQIPPSAKIAKRRD 415
F G L++Y+GSR VPRK +P +R D
Sbjct: 467 FQAGVLLLQHYFGSRCFVPRKLLPEKYSYYRRLD 500
>At1g78970.2 68414.m09208 lupeol synthase (LUP1) /
2,3-oxidosqualene-triterpenoid cyclase identical to
lupeol synthase GI:1762150 from [Arabidopsis thaliana],
2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis
thaliana] GI:2738027; contains Pfam profile PF00432:
Prenyltransferase and squalene oxidase repeat; contains
TIGRfam profile TIGR01787: squalene/oxidosqualene
cyclases; identical to cDNA
2,3-oxidosqualene-triterpenoid cyclase GI:2738026
Length = 757
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 97 NVGGVHYATTRDTLLREPDFAARRRASDSEHPRDARGRIFFDRDGVLFRYVLDYLQRRVD 276
N+ + Y TT + L R + +ASD P + G +FF + Y+ +L+ D
Sbjct: 86 NIEEITYETTTNALRRGVRYFTALQASDGHWPGEITGPLFFLPPLIFCLYITGHLEEVFD 145
Query: 277 S 279
+
Sbjct: 146 A 146
>At1g78970.1 68414.m09207 lupeol synthase (LUP1) /
2,3-oxidosqualene-triterpenoid cyclase identical to
lupeol synthase GI:1762150 from [Arabidopsis thaliana],
2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis
thaliana] GI:2738027; contains Pfam profile PF00432:
Prenyltransferase and squalene oxidase repeat; contains
TIGRfam profile TIGR01787: squalene/oxidosqualene
cyclases; identical to cDNA
2,3-oxidosqualene-triterpenoid cyclase GI:2738026
Length = 757
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 97 NVGGVHYATTRDTLLREPDFAARRRASDSEHPRDARGRIFFDRDGVLFRYVLDYLQRRVD 276
N+ + Y TT + L R + +ASD P + G +FF + Y+ +L+ D
Sbjct: 86 NIEEITYETTTNALRRGVRYFTALQASDGHWPGEITGPLFFLPPLIFCLYITGHLEEVFD 145
Query: 277 S 279
+
Sbjct: 146 A 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,029
Number of Sequences: 28952
Number of extensions: 271480
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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