Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I21
         (1033 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.0  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   4.6  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   4.6  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.1  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 25   9.5  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 20/76 (26%), Positives = 21/76 (27%)
 Frame = -1

Query: 532 PPFLXXPPXXXGVXPPXPGXKXLGGXKXPXXGNFXPGFNKXKXPPXXXPPFPQKVRGXGX 353
           PP    PP      PP P          P      P +     PP   PP P        
Sbjct: 119 PPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPP 178

Query: 352 XPKXSXXXXPPPPIXP 305
            P       PPPP  P
Sbjct: 179 YPPPPNPPYPPPPNPP 194


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 28/93 (30%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
 Frame = -1

Query: 562 KTPXXGFFXGPPFLXXPPXXXGVXPPXPGXKXLGGXKXPXXGNF----XPGFNKXKXPP- 398
           K P  G   G P    P    G  PP PG    GG   P  G       PG  +   PP 
Sbjct: 482 KVPGGGQGWGQP---PPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 538

Query: 397 -----XXXPPFPQKVRGXGXXPKXSXXXXPPPP 314
                   PP P   +G G  P  +     PPP
Sbjct: 539 PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP 571


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
 Frame = -1

Query: 562 KTPXXGFFXGPPFLXXPPXXXGVXPPXPGXKXLGGXKXP----XXGNFXPGFNKXKXPPX 395
           K P  G F  PP +  PP   G  P     +       P      G+  P   +   PP 
Sbjct: 158 KKPSQGSFPPPPPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPP 217

Query: 394 XXPPFPQKVRGXGXXPKXSXXXXPPPP 314
             P      R     P  S    P PP
Sbjct: 218 PPPGRGPSQRSLAPPPTGSSRPLPAPP 244



 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = -1

Query: 532 PPFLXXPPXXXGVXPPXPGX--KXLGGXKXPXXGNFXPGFNKXKXPPXXXP 386
           PP    P       PP PG   + LGG   P  G   P   K   PP   P
Sbjct: 344 PPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPS-GKINPPPPPPP 393


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
 Frame = -1

Query: 562 KTPXXGFFXGPPFLXXPPXXXGVXPPXPGXKXLGGXKXP----XXGNFXPGFNKXKXPPX 395
           K P  G F  PP +  PP   G  P     +       P      G+  P   +   PP 
Sbjct: 70  KKPSQGSFPPPPPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPP 129

Query: 394 XXPPFPQKVRGXGXXPKXSXXXXPPPP 314
             P      R     P  S    P PP
Sbjct: 130 PPPGRGPSQRSLAPPPTGSSRPLPAPP 156



 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = -1

Query: 532 PPFLXXPPXXXGVXPPXPGX--KXLGGXKXPXXGNFXPGFNKXKXPPXXXP 386
           PP    P       PP PG   + LGG   P  G   P   K   PP   P
Sbjct: 256 PPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPS-GKINPPPPPPP 305


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 17/69 (24%), Positives = 20/69 (28%)
 Frame = -1

Query: 511  PXXXGVXPPXPGXKXLGGXKXPXXGNFXPGFNKXKXPPXXXPPFPQKVRGXGXXPKXSXX 332
            P    + PP          + P  G+     N    PP   P  P K  G    P     
Sbjct: 1204 PPTTAIPPPMTNTMTHSAPRPPPMGHHM--MNMPPPPPAMPPDGPPKFMGLPPPPPGMRP 1261

Query: 331  XXPPPPIXP 305
              P PP  P
Sbjct: 1262 MPPQPPFMP 1270


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 24.6 bits (51), Expect(2) = 9.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -3

Query: 701 PPPPPPXXXXXXFFXKXXXPPP 636
           PPPPPP             PPP
Sbjct: 198 PPPPPPPPPPPPILELAAPPPP 219



 Score = 22.2 bits (45), Expect(2) = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 710 GRXPPPPPP 684
           G  PPPPPP
Sbjct: 193 GGPPPPPPP 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,096,356
Number of Sequences: 59808
Number of extensions: 207325
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3082922180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)