Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I20
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 235 6e-63
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 31 0.29
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 29 1.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 2.0
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 2.0
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 27 2.7
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 27 2.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 4.7
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 4.7
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 4.7
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 27 4.7
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 4.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 8.2
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 8.2
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 235 bits (575), Expect = 6e-63
Identities = 107/157 (68%), Positives = 132/157 (84%)
Frame = +2
Query: 356 EGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSK 535
+GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP+P+VR A+ E+FKV+++GKSK
Sbjct: 83 QGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSK 142
Query: 536 RKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKGHVTHPELKATFCLPIIGVKKN 715
+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK +VTH EL T LPIIGVKKN
Sbjct: 143 KNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKN 202
Query: 716 PSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWG 826
P S YT LGV+TKGTVIEVN+SELGLVT GKVVWG
Sbjct: 203 PQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKVVWG 239
Score = 53.6 bits (123), Expect = 4e-08
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +1
Query: 193 ARAPHKRAEKARKLRGIKAKXFNKERRNEKIQMKKKIKAHERERMSNRNTE 345
AR H + A+K RGIKAK + ++RR EKIQMKK IK HE + R ++
Sbjct: 29 AREAHDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGSD 79
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 813 KLCGGKYAQVTNNPENDGCINAVL 884
K+ GKYAQ+TNNPE DGC+NA+L
Sbjct: 235 KVVWGKYAQITNNPELDGCVNALL 258
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 91 SNQQCRSHA--SLARHQKLXGXSGFAFCGAQTESVKARAPHKRAEKARKLRGIKAKXFNK 264
+N+ C A ++A + F E+++ A HK +K R+ + K +
Sbjct: 54 ANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113
Query: 265 ERRNEKIQMKKKIKAHERERMSNRN 339
R +E ++ ++++ + RER N+N
Sbjct: 114 SR-DELLRQQEELLSRARERFKNQN 137
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 193 ARAPHKRAEKARKLRGIK-AKXFNKERRNE----KIQMKKKIKAHERERMSNRNTEK 348
A++P+ +++ + I+ A +K RRN + ++KKK+K + ER + TEK
Sbjct: 246 AQSPNANSKRTKATSAIRTAAEEDKRRRNTAASARFRIKKKLKEQQLERTAKELTEK 302
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 175 QTESVKARAPHKRAEKARKLRGIKAKXFNKERRNEKIQMKKKIKAHERERMSNRNTEKGR 354
+ E +K ++ E+ +KLR + K + EK++ K++I+ E++R +K R
Sbjct: 94 EAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLE-KERIRLQEQQRRKEERDQKLR 152
Query: 355 RR 360
+
Sbjct: 153 EK 154
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 626 PMALRFKKGHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 748
PM F + HP K FC+P + ++ P LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 91 SNQQCRSHASLARHQKLXGXSGFAFCGAQTESVKARAPHKRAEKARKLRGIKAKXFNKER 270
++ +C L H +GFA TES+K PH R + + I+ K ++R
Sbjct: 50 TDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQ-KVARQQR 108
Query: 271 RNEKIQMKK 297
+ K + KK
Sbjct: 109 KQRKNRGKK 117
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 294 KENQSARKRKNVKQKHRERSPKVPCLFIYWTGMFNLGLKYYLT**NKSVKRKLENG 461
+ENQS+R R+ K KH+ ++ LF + T + ++ K KSVK L++G
Sbjct: 121 RENQSSRLREAEKSKHKNKTRTRYVLFSWRTDVNDIERKL------KSVKDFLQDG 170
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +2
Query: 485 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 622
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 291 EKENQSARKRKNVKQKHRERSPKVP 365
EK+N+ +K K K+ +E++PK P
Sbjct: 247 EKQNKKEKKDKKDKKDKKEKAPKEP 271
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 300 FLFHLNLFIAAFLIEXFSFDTAEFARLFSAFMRRTS 193
FL+ LF LI F+ F LFS F R S
Sbjct: 177 FLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 226 RKLRGIKAKXFNKERRNEKIQMKKKIKAHERERMSNRNTEKGRRR 360
R L ++A+ K++R + +++ K HE ER+S+RN + R+
Sbjct: 5 RGLNPVQAESRKKKKREQIKVREERAKRHE-ERLSHRNMSQMERQ 48
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 172 AQTESVKARAPHKRAEKARKLRGIKAKXFNKERRNEKIQMKKKIKAHERERMSNRNTEKG 351
A E + KRA + R +AK + EK++ +++I+ E +S + EK
Sbjct: 805 ANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRKLAEKA 864
Query: 352 RRR 360
R
Sbjct: 865 AAR 867
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 285 SDEKENQSARKRKNVKQKHRERS 353
SD++E QS +K+K ++K + +S
Sbjct: 932 SDDEEKQSGKKKKKDRKKRKSKS 954
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 282 DSDEKENQSARKRKNVKQKHRE-RSPKVPCLFIYW 383
++D+ N K++ K H + S KVPC F W
Sbjct: 1137 NNDDPNNILTTKQRTQKDLHDKLTSKKVPCTFCCW 1171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,815
Number of Sequences: 5004
Number of extensions: 54730
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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