Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I18
         (1369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   8.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   8.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 856  PPPPRXXPXLXPPXXAHTS--PXRXPPS 933
            PPPP   P   PP  A TS  P   PP+
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPPA 1911


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = +1

Query: 814  PXPPXXASXXQSX----SPPPPRXXPXLXPPXXAHTSPXRXPP 930
            P PP  AS   S     SPPPP+      PP  + T   R PP
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGT---RVPP 947


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 813  PXPTPPREXPXVXITPAPXPXSXSXTPXXSSHXP 914
            P   PP   P V + P P P +    P  S+  P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,053
Number of Sequences: 5004
Number of extensions: 12636
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 755127640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)