Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I18
(1369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.4
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.4
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 30 3.3
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 30 3.3
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 30 3.3
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 30 3.3
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 5.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 7.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 7.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 7.6
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 814 PXPPXXASXXQSX-SPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P PP S + +PPPP P + PP + P R P S
Sbjct: 76 PPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPAS 116
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 814 PXPPXXASXXQSX-SPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P PP S + +PPPP P + PP + P R P S
Sbjct: 298 PPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPAS 338
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P P AS QS P P P PP +P PP+
Sbjct: 297 PTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P P AS QS P P P PP +P PP+
Sbjct: 247 PTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 286
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P P AS QS P P P PP +P PP+
Sbjct: 297 PTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P P AS QS P P P PP +P PP+
Sbjct: 297 PTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPP 930
P PP + PPPP P PP P PP
Sbjct: 32 PPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 7.6
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPSLGR 942
P PP + PP P P PP + P PP GR
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR 306
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 7.6
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPS 933
P P +PP P+ P PP +P R PPS
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPS 189
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 7.6
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 814 PXPPXXASXXQSXSPPPPRXXPXLXPPXXAHTSPXRXPPSLGR 942
P PP + PP P P PP + P PP GR
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,351,508
Number of Sequences: 27780
Number of extensions: 119317
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3860877538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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