Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I16
         (1005 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)                60   4e-09
SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)                   58   1e-08
SB_25122| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_33488| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.48 
SB_39984| Best HMM Match : RadC (HMM E-Value=2.2)                      30   2.6  
SB_54105| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            29   7.9  
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               29   7.9  
SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.9  
SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   7.9  

>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
          Length = 271

 Score = 59.7 bits (138), Expect = 4e-09
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = +3

Query: 501 ITVIHRNQGITQEKPCKQKASQKARNRKK-AXWLPFFXRXRPPEQASQKSTLXSXVPKPD 677
           + +I+ NQGITQE+ C+QKAS++    K+   W   F     P  +  K        +  
Sbjct: 80  VGLIYLNQGITQERTCEQKASKRPGTVKRPRCWR--FSIGSAPLTSITKIDAQVRGGETR 137

Query: 678 RTIXIPXVSPWKXPSCPLLFRPCRLXNTCPPF 773
           +        P + PSC LLFRPCRL +TCPPF
Sbjct: 138 QDYKDTRRFPLEAPSCALLFRPCRLPDTCPPF 169



 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/27 (62%), Positives = 17/27 (62%)
 Frame = +2

Query: 623 P*TSIXKIXPQXXGAXTRQDYKXTXRF 703
           P TSI KI  Q  G  TRQDYK T RF
Sbjct: 120 PLTSITKIDAQVRGGETRQDYKDTRRF 146


>SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)
          Length = 347

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
 Frame = +3

Query: 516 RNQGITQEKPCKQKASQKARNRKKAXWLPFFXRXRPPEQASQ-KSTLXSXVPKPDRTIXI 692
           +NQGITQE+ C+QKAS++    K+     F     P    ++  + +     + D     
Sbjct: 114 KNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQD--YKD 171

Query: 693 PXVSPWKXPSCPLLFRPCRLXNTCPPF 773
               P + PSC LLFRPCRL +TCPPF
Sbjct: 172 TRRFPLEAPSCALLFRPCRLPDTCPPF 198



 Score = 35.5 bits (78), Expect = 0.068
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 511 STEIRG*RRKNXVSKRXAKRPETVKRPXGCXFSIGXAPLNKHXK 642
           +T+ +G  ++    ++ +KRP TVKRP    FSIG APL    K
Sbjct: 112 ATKNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 155



 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/27 (62%), Positives = 17/27 (62%)
 Frame = +2

Query: 623 P*TSIXKIXPQXXGAXTRQDYKXTXRF 703
           P TSI KI  Q  G  TRQDYK T RF
Sbjct: 149 PLTSITKIDAQVRGGETRQDYKDTRRF 175


>SB_25122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 18/28 (64%), Positives = 18/28 (64%)
 Frame = -3

Query: 703 ETXGXFIVLSGXGTXXLRVDFXDACSGG 620
           ET G FIVLSG  T  L V F DAC GG
Sbjct: 21  ETLGIFIVLSGFATTDLSVRFRDACQGG 48


>SB_33488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +2

Query: 623 P*TSIXKIXPQXXGAXTRQDYKXTXRF 703
           P TSI K   Q  G  TRQDYK T RF
Sbjct: 119 PLTSITKSDAQISGGETRQDYKDTRRF 145


>SB_39984| Best HMM Match : RadC (HMM E-Value=2.2)
          Length = 229

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +2

Query: 623 P*TSIXKIXPQXXGAXTRQDYKXTXR 700
           P TSI K   Q  G  TRQDYK T R
Sbjct: 157 PLTSITKSDAQISGGETRQDYKDTRR 182


>SB_54105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 710 PGGNXWYXYSPVGFXHL*XEGXFLXCLFRG 621
           PG N WY +SPVGF     E     CL  G
Sbjct: 5   PGCNAWYRHSPVGFGPHGFERQLSSCLSGG 34


>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 791 PLILWITVLPPLSEL 805


>SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 33  PLILWITVLPPLSEL 47


>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 56  PLILWITVLPPLSEL 70


>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 438 PLILWITVLPPLSEL 452


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 587 PLILWITVLPPLSEL 601


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 682 VLSGXGTXXLRVDFXDACSGG 620
           VLSG  T  L V F DAC GG
Sbjct: 351 VLSGFATTDLSVRFRDACQGG 371


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 682  VLSGXGTXXLRVDFXDACSGG 620
            VLSG  T  L V F DAC GG
Sbjct: 1186 VLSGFATTDLSVRFRDACQGG 1206


>SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 55  PLILWITVLPPLSEL 69


>SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 526 P*FLWITVIPPLSEV 482
           P  LWITV+PPLSE+
Sbjct: 33  PLILWITVLPPLSEL 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,469,789
Number of Sequences: 59808
Number of extensions: 256665
Number of successful extensions: 507
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 3003134652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)