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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I16
         (1005 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15830.1 68414.m01900 expressed protein                             32   0.52 
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    30   2.8  
At4g19580.1 68417.m02878 DNAJ heat shock N-terminal domain-conta...    29   3.7  
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin...    29   4.9  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   6.4  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   8.5  

>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -1

Query: 888 TGGFGXXRPRXGGGXTYTXSGXPNXVXYGEXXTXXGRGERADRYSVSGRVGTGEG 724
           T G G       GG  +T  G P  +  G   T    G   DR    GR  TG+G
Sbjct: 17  TSGGGGCPMTISGGRLFTGGGDPVIITGGRLSTGAAGGVNVDRSKGGGRRKTGDG 71


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
 Frame = -1

Query: 963 GFFXRGWXSRXDSXPGXRAQX-VGXXTGGFGXXRPRXGGGXTYTXSGXPNXVXYGEXXTX 787
           G F  G   R  S  G       G  +GG+G  R    GG +   SG  +   +G     
Sbjct: 496 GSFGGGMRDRGSSFGGRSGGGGYGGSSGGYGGGR---SGGSSNRYSGDSDRSGFGSFGMR 552

Query: 786 XGRGERADRYSVS-GRVGTGEGKREXSRGKR 697
              G  +DR S S GR   G G+   S   R
Sbjct: 553 SPEGYGSDRSSQSGGRSSFGGGRSGGSSNNR 583


>At4g19580.1 68417.m02878 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 301

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = +3

Query: 480 FTSLKGGITVIHRNQGITQEKPCK------QKASQKARNRKKAXWLPFFXRXRPPEQASQ 641
           F   +G   ++   + +  ++PC       Q  +QK++N  +      +   R P+Q  +
Sbjct: 89  FNGAEGAFKLVRHARDLLSDQPCLIYNVQGQTQTQKSQNHTRTRTCVAYDHKRKPKQVKR 148

Query: 642 KSTLXSXVPKPDR 680
           K +     PKP +
Sbjct: 149 KRSRTQDPPKPHK 161


>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
           protein   contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 370

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 507 VIHRNQGITQEKPCKQKASQKARNRKKAXWLPFFXRXRPPEQASQKSTLXSXVPKPDRT 683
           V  +N    Q    K++  +  +N ++  +  FF + +   Q  QK  + S +PKP RT
Sbjct: 296 VKQQNHNDAQAPDKKKQPPEVKQNEQEGGFFGFFGKKK---QQPQKEKIVSEIPKPQRT 351


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = +3

Query: 618 RPPEQASQKSTLXSXVPKPDRTIXIPXVS-PWKXPSCPLLFRPCRLXNTCPPFXPFRXXX 794
           RPP      S   S  P+P     +P  S P   P  P+   P  L +  PP  P     
Sbjct: 378 RPPVNCGSFSCGRSVSPRPPVVTPLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYS 437

Query: 795 PXP 803
           P P
Sbjct: 438 PPP 440


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = +3

Query: 621 PPEQASQKSTLXSXVPKPDRTIXIPXVSPWKXPSCPLLFRPCRLXNTCPP 770
           PP Q      L S  P P +      +SP   P  P    P RL N  PP
Sbjct: 43  PPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPP 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,367
Number of Sequences: 28952
Number of extensions: 189007
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2460538344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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