BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I16 (1005 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g15830.1 68414.m01900 expressed protein 32 0.52 At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 30 2.8 At4g19580.1 68417.m02878 DNAJ heat shock N-terminal domain-conta... 29 3.7 At5g52700.1 68418.m06542 heavy-metal-associated domain-containin... 29 4.9 At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 6.4 At3g24540.1 68416.m03082 protein kinase family protein contains ... 28 8.5 >At1g15830.1 68414.m01900 expressed protein Length = 483 Score = 32.3 bits (70), Expect = 0.52 Identities = 18/55 (32%), Positives = 21/55 (38%) Frame = -1 Query: 888 TGGFGXXRPRXGGGXTYTXSGXPNXVXYGEXXTXXGRGERADRYSVSGRVGTGEG 724 T G G GG +T G P + G T G DR GR TG+G Sbjct: 17 TSGGGGCPMTISGGRLFTGGGDPVIITGGRLSTGAAGGVNVDRSKGGGRRKTGDG 71 >At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to RNA helicases GI:3775995, GI:3775987 from [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 616 Score = 29.9 bits (64), Expect = 2.8 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%) Frame = -1 Query: 963 GFFXRGWXSRXDSXPGXRAQX-VGXXTGGFGXXRPRXGGGXTYTXSGXPNXVXYGEXXTX 787 G F G R S G G +GG+G R GG + SG + +G Sbjct: 496 GSFGGGMRDRGSSFGGRSGGGGYGGSSGGYGGGR---SGGSSNRYSGDSDRSGFGSFGMR 552 Query: 786 XGRGERADRYSVS-GRVGTGEGKREXSRGKR 697 G +DR S S GR G G+ S R Sbjct: 553 SPEGYGSDRSSQSGGRSSFGGGRSGGSSNNR 583 >At4g19580.1 68417.m02878 DNAJ heat shock N-terminal domain-containing protein low similarity to SP|Q9QYI4 DnaJ homolog subfamily B member 12 {Mus musculus}; contains Pfam profile PF00226: DnaJ domain Length = 301 Score = 29.5 bits (63), Expect = 3.7 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +3 Query: 480 FTSLKGGITVIHRNQGITQEKPCK------QKASQKARNRKKAXWLPFFXRXRPPEQASQ 641 F +G ++ + + ++PC Q +QK++N + + R P+Q + Sbjct: 89 FNGAEGAFKLVRHARDLLSDQPCLIYNVQGQTQTQKSQNHTRTRTCVAYDHKRKPKQVKR 148 Query: 642 KSTLXSXVPKPDR 680 K + PKP + Sbjct: 149 KRSRTQDPPKPHK 161 >At5g52700.1 68418.m06542 heavy-metal-associated domain-containing protein contains Pfam profile PF00403: Heavy-metal-associated domain Length = 370 Score = 29.1 bits (62), Expect = 4.9 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 507 VIHRNQGITQEKPCKQKASQKARNRKKAXWLPFFXRXRPPEQASQKSTLXSXVPKPDRT 683 V +N Q K++ + +N ++ + FF + + Q QK + S +PKP RT Sbjct: 296 VKQQNHNDAQAPDKKKQPPEVKQNEQEGGFFGFFGKKK---QQPQKEKIVSEIPKPQRT 351 >At4g13340.1 68417.m02084 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 760 Score = 28.7 bits (61), Expect = 6.4 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Frame = +3 Query: 618 RPPEQASQKSTLXSXVPKPDRTIXIPXVS-PWKXPSCPLLFRPCRLXNTCPPFXPFRXXX 794 RPP S S P+P +P S P P P+ P L + PP P Sbjct: 378 RPPVNCGSFSCGRSVSPRPPVVTPLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYS 437 Query: 795 PXP 803 P P Sbjct: 438 PPP 440 >At3g24540.1 68416.m03082 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 509 Score = 28.3 bits (60), Expect = 8.5 Identities = 17/50 (34%), Positives = 19/50 (38%) Frame = +3 Query: 621 PPEQASQKSTLXSXVPKPDRTIXIPXVSPWKXPSCPLLFRPCRLXNTCPP 770 PP Q L S P P + +SP P P P RL N PP Sbjct: 43 PPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPP 92 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,296,367 Number of Sequences: 28952 Number of extensions: 189007 Number of successful extensions: 303 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 302 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2460538344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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