Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I15
         (1010 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    31   0.34 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.3  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 570 FPFLXGIRPMVVQ*PSWTHFRSPVGQFLGPKSFFMLVLGTVXAR 439
           FP L G   + +Q P + +F+S +  F G KS F +VL    ++
Sbjct: 254 FPSLFGTLHVGIQFPLYEYFKSFLDDFFGKKSNFHIVLAATLSK 297


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 268 PGKXSRDTPPSRGEFPKHRRKQTPATNSQRHKT*SPARSPFASKN 134
           P       PPS G  P +     PAT +    + +PA +P AS+N
Sbjct: 50  PPSVDHSAPPS-GPPPSYSNSAAPATPAASASSAAPAPAPAASQN 93


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 187 NGTKPDHKPWKH 198



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 214 NGTKPDHKPWKH 225



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 243 NGTKPDHKPWKH 254



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 272 NGTKPDHKPWKH 283



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 299 NGTKPDHKPWKH 310



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 326 NGTKPDHKPWKH 337



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 355 NGTKPDHKPWKH 366



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 183 NGTKPDHQPEAH 148
           NGTKPDH+P  H
Sbjct: 409 NGTKPDHKPWKH 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,109
Number of Sequences: 5004
Number of extensions: 59479
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)