Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I14
(1167 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 40 0.004
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 40 0.004
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 40 0.004
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.055
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.055
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.055
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 34 0.17
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.39
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.39
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.68
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 32 0.89
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 32 0.89
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 32 0.89
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.2
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 2.1
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 31 2.1
AF016682-4|AAB66185.1| 263|Caenorhabditis elegans Hypothetical ... 30 2.7
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 4.8
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.8
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.8
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 4.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +3
Query: 660 GXNPXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
G P P G PPPP GG PPP PP GPPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +3
Query: 645 IXGXXGXNPXPXXXNXXXXGXPPPPXXGG--GXKXXXKKKXPPPXXFPPPXKXGPPPXEK 818
I G P P G PPPP GG PPP PPP PP K
Sbjct: 722 ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 819 XSP 827
P
Sbjct: 782 GGP 784
Score = 32.3 bits (70), Expect = 0.68
Identities = 23/85 (27%), Positives = 25/85 (29%)
Frame = +1
Query: 574 PXPXXPFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQK 753
P P P P G P + G P + PPPP GG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Query: 754 KXPPXLXXSPPPXKXAPPPXKXFLP 828
P PPP PPP F P
Sbjct: 775 PPPGGFKGGPPP----PPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +3
Query: 660 GXNPXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
G P P G PPPP GG PPP PP GPPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +3
Query: 645 IXGXXGXNPXPXXXNXXXXGXPPPPXXGG--GXKXXXKKKXPPPXXFPPPXKXGPPPXEK 818
I G P P G PPPP GG PPP PPP PP K
Sbjct: 722 ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 819 XSP 827
P
Sbjct: 782 GGP 784
Score = 32.3 bits (70), Expect = 0.68
Identities = 23/85 (27%), Positives = 25/85 (29%)
Frame = +1
Query: 574 PXPXXPFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQK 753
P P P P G P + G P + PPPP GG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Query: 754 KXPPXLXXSPPPXKXAPPPXKXFLP 828
P PPP PPP F P
Sbjct: 775 PPPGGFKGGPPP----PPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +3
Query: 660 GXNPXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
G P P G PPPP GG PPP PP GPPP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Score = 35.5 bits (78), Expect = 0.073
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +3
Query: 645 IXGXXGXNPXPXXXNXXXXGXPPPPXXGG--GXKXXXKKKXPPPXXFPPPXKXGPPPXEK 818
I G P P G PPPP GG PPP PPP PP K
Sbjct: 305 ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Query: 819 XSP 827
P
Sbjct: 365 GGP 367
Score = 32.3 bits (70), Expect = 0.68
Identities = 23/85 (27%), Positives = 25/85 (29%)
Frame = +1
Query: 574 PXPXXPFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQK 753
P P P P G P + G P + PPPP GG
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Query: 754 KXPPXLXXSPPPXKXAPPPXKXFLP 828
P PPP PPP F P
Sbjct: 358 PPPGGFKGGPPP----PPPPGMFAP 378
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.9 bits (79), Expect = 0.055
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXG-PPPXEKXSP 827
G PPPP G + PP PPP G PPP SP
Sbjct: 287 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 329
Score = 35.5 bits (78), Expect = 0.073
Identities = 28/114 (24%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Frame = +2
Query: 668 PPPXXXXFXKXXGXPPPXXXGGGKKXXKKKXPPXXXF----PPPXKXXPPPXXKXFSPXX 835
PPP G PPP G + PP PPP PPP P
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300
Query: 836 XXXXXXXXXXXXXXFFXXXGGXPPPXXKKXPXFXXXXKKNXPPXKKXKXPPPXG 997
GG PPP P K+ P PP G
Sbjct: 301 PPPRGSPPTGSLPP--PQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTG 352
Score = 35.5 bits (78), Expect = 0.073
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXXFPPPXKXG--PPPXEKXSP 827
PPPP G PPP PPP G PPP SP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Score = 34.3 bits (75), Expect = 0.17
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPP-XXFPPPXKXG---PPPXEKXSP 827
G PPPP G PPP PPP + G PPP + SP
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXX-FPPPXKXG-PPPXEKXSP 827
PPPP G PPP PPP + G PPP SP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 280
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXX--KKKXPPPXXFPPPXKXGPPPXEKXSP 827
G PPPP GG PPP PP PPP SP
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 703 GXPPPPXXGGGXKXXQKKXPPXLXXSPPPXKXAPPP 810
G PPPP G PP SPPP PP
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = +1
Query: 589 PFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQKKXPPX 768
P PP P P G P G PPPP G PP
Sbjct: 233 PAGSPPPPPPPKG-SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG-------SPPPPP 284
Query: 769 LXXSPPPXKXAPPP 810
SPPP + PP
Sbjct: 285 AGGSPPPPRAGSPP 298
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
G PPPP G P PPP G PP
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.9 bits (79), Expect = 0.055
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXG-PPPXEKXSP 827
G PPPP G + PP PPP G PPP SP
Sbjct: 308 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 350
Score = 35.5 bits (78), Expect = 0.073
Identities = 28/114 (24%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Frame = +2
Query: 668 PPPXXXXFXKXXGXPPPXXXGGGKKXXKKKXPPXXXF----PPPXKXXPPPXXKXFSPXX 835
PPP G PPP G + PP PPP PPP P
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321
Query: 836 XXXXXXXXXXXXXXFFXXXGGXPPPXXKKXPXFXXXXKKNXPPXKKXKXPPPXG 997
GG PPP P K+ P PP G
Sbjct: 322 PPPRGSPPTGSLPP--PQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTG 373
Score = 35.5 bits (78), Expect = 0.073
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXXFPPPXKXG--PPPXEKXSP 827
PPPP G PPP PPP G PPP SP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Score = 34.3 bits (75), Expect = 0.17
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPP-XXFPPPXKXG---PPPXEKXSP 827
G PPPP G PPP PPP + G PPP + SP
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXX-FPPPXKXG-PPPXEKXSP 827
PPPP G PPP PPP + G PPP SP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 301
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXX--KKKXPPPXXFPPPXKXGPPPXEKXSP 827
G PPPP GG PPP PP PPP SP
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 703 GXPPPPXXGGGXKXXQKKXPPXLXXSPPPXKXAPPP 810
G PPPP G PP SPPP PP
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = +1
Query: 589 PFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQKKXPPX 768
P PP P P G P G PPPP G PP
Sbjct: 254 PAGSPPPPPPPKG-SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG-------SPPPPP 305
Query: 769 LXXSPPPXKXAPPP 810
SPPP + PP
Sbjct: 306 AGGSPPPPRAGSPP 319
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
G PPPP G P PPP G PP
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.9 bits (79), Expect = 0.055
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXG-PPPXEKXSP 827
G PPPP G + PP PPP G PPP SP
Sbjct: 293 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 335
Score = 35.5 bits (78), Expect = 0.073
Identities = 28/114 (24%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Frame = +2
Query: 668 PPPXXXXFXKXXGXPPPXXXGGGKKXXKKKXPPXXXF----PPPXKXXPPPXXKXFSPXX 835
PPP G PPP G + PP PPP PPP P
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306
Query: 836 XXXXXXXXXXXXXXFFXXXGGXPPPXXKKXPXFXXXXKKNXPPXKKXKXPPPXG 997
GG PPP P K+ P PP G
Sbjct: 307 PPPRGSPPTGSLPP--PQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTG 358
Score = 35.5 bits (78), Expect = 0.073
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXXFPPPXKXG--PPPXEKXSP 827
PPPP G PPP PPP G PPP SP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Score = 34.3 bits (75), Expect = 0.17
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPP-XXFPPPXKXG---PPPXEKXSP 827
G PPPP G PPP PPP + G PPP + SP
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXX-FPPPXKXG-PPPXEKXSP 827
PPPP G PPP PPP + G PPP SP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 286
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXX--KKKXPPPXXFPPPXKXGPPPXEKXSP 827
G PPPP GG PPP PP PPP SP
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 703 GXPPPPXXGGGXKXXQKKXPPXLXXSPPPXKXAPPP 810
G PPPP G PP SPPP PP
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/74 (28%), Positives = 22/74 (29%)
Frame = +1
Query: 589 PFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQKKXPPX 768
P PP P P G P G PPPP G PP
Sbjct: 239 PAGSPPPPPPPKG-SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG-------SPPPPP 290
Query: 769 LXXSPPPXKXAPPP 810
SPPP + PP
Sbjct: 291 AGGSPPPPRAGSPP 304
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
G PPPP G P PPP G PP
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 34.3 bits (75), Expect = 0.17
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 817 FSXGGGPXFXGGGKXXGGGXFFFXXFFXPPPXXGGGG 707
F GGG GGG GG F PPP GGGG
Sbjct: 186 FGPGGGGGGMGGGGGSGGSGGGSGRFPPPPPPYGGGG 222
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.1 bits (72), Expect = 0.39
Identities = 21/79 (26%), Positives = 21/79 (26%)
Frame = +1
Query: 574 PXPXXPFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQK 753
P P PP P P G P G PPPP G
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Query: 754 KXPPXLXXSPPPXKXAPPP 810
PP S P PPP
Sbjct: 349 PPPPPRYPSAGPGMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.39
Identities = 21/79 (26%), Positives = 21/79 (26%)
Frame = +1
Query: 574 PXPXXPFXXPPKXKXPXXFGXPXXSXGXXGKTPXLXVXIXKXXGXPPPPXXGGGXKXXQK 753
P P PP P P G P G PPPP G
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Query: 754 KXPPXLXXSPPPXKXAPPP 810
PP S P PPP
Sbjct: 359 PPPPPRYPSAGPGMYPPPP 377
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.3 bits (70), Expect = 0.68
Identities = 19/64 (29%), Positives = 23/64 (35%)
Frame = +3
Query: 636 PXXIXGXXGXNPXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPPXE 815
P + G P P N G PPP GG + PP PP + GPP
Sbjct: 1458 PLGMMRGRGGPPPPRGMNSPMRGMPPPMRGGG----PPMRGGPPMRGGPPMFRGGPPGPG 1513
Query: 816 KXSP 827
+ P
Sbjct: 1514 RGMP 1517
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Frame = +3
Query: 660 GXNPXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXF------PPPXKXGPPP 809
G P P G PPPP G + PP PPP GPPP
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPP 1612
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 703 GXPPPPXXGGGXKXXQKKXPPXLXXSPPPXKXAPPP 810
G PPPP G + PP L PPP PPP
Sbjct: 1571 GGPPPPRGGSHCQG-----PPPLMGGPPPRLGMPPP 1601
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 31.9 bits (69), Expect = 0.89
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +3
Query: 669 PXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPPXEKXSP 827
P P N PPP GG PPP PP PPP P
Sbjct: 204 PVPLTSNIPQAPPAPPPPI-GGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPP 255
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 31.9 bits (69), Expect = 0.89
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +3
Query: 669 PXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPPXEKXSP 827
P P N PPP GG PPP PP PPP P
Sbjct: 190 PVPLTSNIPQAPPAPPPPI-GGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPP 241
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 31.9 bits (69), Expect = 0.89
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +3
Query: 669 PXPXXXNXXXXGXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPPXEKXSP 827
P P N PPP GG PPP PP PPP P
Sbjct: 190 PVPLTSNIPQAPPAPPPPI-GGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPP 241
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
PPPP G + PP PPP PPP
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPP 544
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 708 PPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPP 809
PPPP ++ PPP PPP PPP
Sbjct: 67 PPPPPPPPPLISILQQAPPPPPPPPPPTLKAPPP 100
Score = 29.1 bits (62), Expect = 6.3
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 709 PPPPXXGGGXKXXQKKXPPXLXXSPPPXKXAPPP 810
PPPP Q+ PP PP K PPP
Sbjct: 68 PPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPP 101
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 709 PPPPXXGGGXKXXQKKXPPXLXXSPPPXKXAPPPXKXFL 825
PPPP G G PP + PPP PPP F+
Sbjct: 22 PPPPCFGIGCNQ-----PPIVIAGPPPCFDCPPPAPIFV 55
>AF016682-4|AAB66185.1| 263|Caenorhabditis elegans Hypothetical
protein T07D3.5 protein.
Length = 263
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 710 PPPXXXGGGKKXXKKKXPPXXXFPPPXKXXPP 805
PPP GGG+ K P PPP PP
Sbjct: 190 PPPVIIGGGEVVIGKPYPGDASTPPPYPKFPP 221
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +1
Query: 709 PPPPXXGGGXKXXQKKXPPXLXXS-PPPXKXAPPP 810
PPPP K PP + PPP APPP
Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPP 209
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPPXE 815
G P P G + +K P P PPP GPPP +
Sbjct: 1300 GPPAPGNLPGSSRPSGNRKQPLPP--PPPMIRGPPPDQ 1335
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 668 PPPXXXXFXKXXGXPPPXXXGGGKKXXKKKXPPXXXFPPPXKXXPPPXXKXF 823
PPP F PPP G G PP PP PPP F
Sbjct: 297 PPPPRGHFPP----PPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF 344
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 668 PPPXXXXFXKXXGXPPPXXXGGGKKXXKKKXPPXXXFPPPXKXXPPPXXKXF 823
PPP F PPP G G PP PP PPP F
Sbjct: 297 PPPPRGHFPP----PPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF 344
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 702 GXPPPPXXGGGXKXXXKKKXPPPXXFPPPXKXGPPPXE 815
G P P G + +K P P PPP GPPP +
Sbjct: 1300 GPPAPGNLPGSSRPSGNRKQPLPP--PPPMIRGPPPDQ 1335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,331,510
Number of Sequences: 27780
Number of extensions: 309571
Number of successful extensions: 1757
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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