BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I12 (900 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 103 5e-23 SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 99 4e-22 SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 30 0.52 >SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schizosaccharomyces pombe|chr 2|||Manual Length = 148 Score = 103 bits (246), Expect = 5e-23 Identities = 55/141 (39%), Positives = 72/141 (51%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR Sbjct: 1 MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439 FH KN + P +NLD+LWTLV +TR KY P QS +V + + P T Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120 Query: 440 TCHSKSKVLLKISREENQGCG 502 +++ + + + E+ + G Sbjct: 121 PVIIQTRYVSRRAEEKIKQAG 141 >SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual Length = 148 Score = 99 bits (238), Expect = 4e-22 Identities = 53/141 (37%), Positives = 72/141 (51%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR Sbjct: 1 MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439 FH KN + P +NLD+LWTL+ + R KY P QS +V + + P+T Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120 Query: 440 TCHSKSKVLLKISREENQGCG 502 +++ + + + E+ + G Sbjct: 121 PVIVQTRYVSRRAEEKIKQAG 141 >SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 459 Score = 29.9 bits (64), Expect = 0.52 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +2 Query: 299 NLDKLWTLVSEQTRLKYASAPDGKVP--AHQYCQSWILQVARQRQTPQTTCHSKSKVLLK 472 NL K W +S K++ P+G +P + SW + TP TT S + LK Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIPECPSRNKTSWAVSANAFPVTPNTTICSNAVKNLK 382 Query: 473 IS 478 S Sbjct: 383 CS 384 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,538,833 Number of Sequences: 5004 Number of extensions: 42112 Number of successful extensions: 82 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 80 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 454497130 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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