Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I12
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                        107   2e-23
03_04_0027 + 16593133-16593573                                        103   1e-22
02_01_0563 + 4134954-4135388                                          100   1e-21

>07_03_1250 - 25183375-25183815
          Length = 146

 Score =  107 bits (256), Expect = 2e-23
 Identities = 54/141 (38%), Positives = 77/141 (54%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M TS +K RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           FH  +NK + P +N+++LW++V  +   + A A  GK P     Q    +V  +   P+ 
Sbjct: 61  FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118

Query: 440 TCHSKSKVLLKISREENQGCG 502
               K+K++ K++ ++ +  G
Sbjct: 119 PIVVKAKLISKVAEKKIKAAG 139


>03_04_0027 + 16593133-16593573
          Length = 146

 Score =  103 bits (248), Expect = 1e-22
 Identities = 56/142 (39%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQV-ARQRQTPQ 436
           FH   N+  CP +N+++LW++V      K A A  GK P     Q    +V  +    PQ
Sbjct: 61  FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117

Query: 437 TTCHSKSKVLLKISREENQGCG 502
                K+K++ K++ ++ +  G
Sbjct: 118 RPIVVKAKLISKVAEKKIKAAG 139


>02_01_0563 + 4134954-4135388
          Length = 144

 Score =  100 bits (240), Expect = 1e-21
 Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQV-ARQRQTPQ 436
           FH   N+  CP +N+++LW++V  +     A A  GK P     Q    +V  +    P+
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115

Query: 437 TTCHSKSKVLLKISREENQGCG 502
                K+K++ K++ ++ +  G
Sbjct: 116 RPIVVKAKLISKVAEKKIKAAG 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,070
Number of Sequences: 37544
Number of extensions: 322805
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)