Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I12
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    77   2e-14
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    32   0.73 
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   5.1  
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 37/100 (37%), Positives = 57/100 (57%)
 Frame = +2

Query: 203 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAH 382
           R + +  HPGYFGK+GMR+FH  +N    P +NLDK+W+LVSEQTR  Y +  DG VP  
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126

Query: 383 QYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGCG 502
              ++   +V  +   P+     K+K   + + ++ +  G
Sbjct: 127 DVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVG 166


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 287 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 150
           R+SC   +  F   +C+S    T PC   D  H +H  DL+D  GA
Sbjct: 52  RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 269 RKNKNFCPVLNLDKLWTLVSEQTRL--KYASAPDGKVPAHQYCQSWILQVARQRQTPQ 436
           RKNK  C   +   L  L+  QT+   K +SAP   +P  Q   SW      +R+ P+
Sbjct: 686 RKNKERCQPGSSPVLLLLIRMQTQAMSKGSSAPPASLPPLQNLPSWSRSSLERRKQPK 743


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 326 RLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAH 189
           R++ K YL    ++  C   +    + +C+   +G+C    CD +H
Sbjct: 85  RVILKTYLCVSYEQGFCKSGNSCTRWHICKGFLEGSCTGTHCDKSH 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,712,117
Number of Sequences: 59808
Number of extensions: 332250
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)