SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I12
         (900 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   131   3e-30
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   131   3e-30
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   131   3e-30
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   130   5e-30
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   126   1e-28
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   126   1e-28
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    38   0.038
AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas...    32   3.3  
AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligas...    32   3.3  
AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas...    32   3.3  
AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligas...    32   3.3  
AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.                 32   3.3  
AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein.     32   3.3  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  131 bits (317), Expect = 3e-30
 Identities = 62/141 (43%), Positives = 84/141 (59%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P     +S   +V  + + P+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 440 TCHSKSKVLLKISREENQGCG 502
               K+K   + + E+ +  G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524
           +P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 98  APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  131 bits (317), Expect = 3e-30
 Identities = 62/141 (43%), Positives = 84/141 (59%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P     +S   +V  + + P+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 440 TCHSKSKVLLKISREENQGCG 502
               K+K   + + E+ +  G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524
           +P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 98  APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  131 bits (317), Expect = 3e-30
 Identities = 62/141 (43%), Positives = 84/141 (59%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P     +S   +V  + + P+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 440 TCHSKSKVLLKISREENQGCG 502
               K+K   + + E+ +  G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524
           +P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 98  APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  130 bits (315), Expect = 5e-30
 Identities = 61/136 (44%), Positives = 82/136 (60%)
 Frame = +2

Query: 95  KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 274
           +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64

Query: 275 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQTTCHSK 454
           N++FCP +NLDKLWTLVSEQTR+  A    G  P     +S   +V  + + P+     K
Sbjct: 65  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVK 124

Query: 455 SKVLLKISREENQGCG 502
           +K   + + E+ +  G
Sbjct: 125 AKFFSRRAEEKIKSVG 140



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524
           +P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 97  APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  126 bits (304), Expect = 1e-28
 Identities = 60/141 (42%), Positives = 84/141 (59%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           ++ ++N++FCP +NLDKLWTLVSEQTR+  A    G  P     +S   +V  + +  + 
Sbjct: 61  YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120

Query: 440 TCHSKSKVLLKISREENQGCG 502
               K+K+  + + E+ +  G
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVG 141



 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524
           +P+I++V++            KQPVIV               VGGACVL A
Sbjct: 98  APIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  126 bits (304), Expect = 1e-28
 Identities = 55/99 (55%), Positives = 67/99 (67%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVP 376
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 38.3 bits (85), Expect = 0.038
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +2

Query: 296 LNLDKLWTLVSEQTRLKYASAPDGKVP 376
           +NLDKLWTLVSEQTR+  A    G  P
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAP 27


>AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 4 protein.
          Length = 5183

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 445  TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305
            T C  SLPL ++L +  L+++ ++GDL +WS  +  P++ R   P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319


>AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligase
           E3 component n-recognin 4 protein.
          Length = 1672

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305
           T C  SLPL ++L +  L+++ ++GDL +WS  +  P++ R   P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535


>AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase E3
            component n-recognin 4 protein.
          Length = 5183

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 445  TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305
            T C  SLPL ++L +  L+++ ++GDL +WS  +  P++ R   P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319


>AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligase
           E3 component n-recognin 4 protein.
          Length = 1672

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305
           T C  SLPL ++L +  L+++ ++GDL +WS  +  P++ R   P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535


>AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.
          Length = 5183

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 445  TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305
            T C  SLPL ++L +  L+++ ++GDL +WS  +  P++ R   P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319


>AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein.
          Length = 1678

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305
           T C  SLPL ++L +  L+++ ++GDL +WS  +  P++ R   P L+
Sbjct: 494 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 541


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,515,460
Number of Sequences: 237096
Number of extensions: 1753293
Number of successful extensions: 3120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3113
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -