BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I12 (900 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 131 3e-30 BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 131 3e-30 AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 131 3e-30 BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 130 5e-30 BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 126 1e-28 AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 126 1e-28 AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 38 0.038 AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas... 32 3.3 AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligas... 32 3.3 AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas... 32 3.3 AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligas... 32 3.3 AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. 32 3.3 AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein. 32 3.3 >U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a protein. Length = 148 Score = 131 bits (317), Expect = 3e-30 Identities = 62/141 (43%), Positives = 84/141 (59%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439 +H ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+ Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120 Query: 440 TCHSKSKVLLKISREENQGCG 502 K+K + + E+ + G Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141 Score = 34.3 bits (75), Expect = 0.61 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524 +P+I++V++ PKQPVIV VGGACVL A Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148 >BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a protein. Length = 148 Score = 131 bits (317), Expect = 3e-30 Identities = 62/141 (43%), Positives = 84/141 (59%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439 +H ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+ Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120 Query: 440 TCHSKSKVLLKISREENQGCG 502 K+K + + E+ + G Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141 Score = 34.3 bits (75), Expect = 0.61 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524 +P+I++V++ PKQPVIV VGGACVL A Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148 >AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A protein. Length = 148 Score = 131 bits (317), Expect = 3e-30 Identities = 62/141 (43%), Positives = 84/141 (59%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439 +H ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+ Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120 Query: 440 TCHSKSKVLLKISREENQGCG 502 K+K + + E+ + G Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141 Score = 34.3 bits (75), Expect = 0.61 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524 +P+I++V++ PKQPVIV VGGACVL A Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148 >BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IMAGE:3543815) protein. Length = 147 Score = 130 bits (315), Expect = 5e-30 Identities = 61/136 (44%), Positives = 82/136 (60%) Frame = +2 Query: 95 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 274 +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++H ++ Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64 Query: 275 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQTTCHSK 454 N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+ K Sbjct: 65 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVK 124 Query: 455 SKVLLKISREENQGCG 502 +K + + E+ + G Sbjct: 125 AKFFSRRAEEKIKSVG 140 Score = 34.3 bits (75), Expect = 0.61 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524 +P+I++V++ PKQPVIV VGGACVL A Sbjct: 97 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147 >BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a protein. Length = 148 Score = 126 bits (304), Expect = 1e-28 Identities = 60/141 (42%), Positives = 84/141 (59%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439 ++ ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + + Sbjct: 61 YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120 Query: 440 TCHSKSKVLLKISREENQGCG 502 K+K+ + + E+ + G Sbjct: 121 PVIVKAKLFSRRAEEKIKSVG 141 Score = 31.1 bits (67), Expect = 5.7 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +3 Query: 372 SPLINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 524 +P+I++V++ KQPVIV VGGACVL A Sbjct: 98 APIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148 >AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a protein. Length = 106 Score = 126 bits (304), Expect = 1e-28 Identities = 55/99 (55%), Positives = 67/99 (67%) Frame = +2 Query: 80 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259 M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60 Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVP 376 +H ++N++FCP +NLDKLWTLVSEQTR+ A G P Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99 >AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a protein. Length = 34 Score = 38.3 bits (85), Expect = 0.038 Identities = 17/27 (62%), Positives = 19/27 (70%) Frame = +2 Query: 296 LNLDKLWTLVSEQTRLKYASAPDGKVP 376 +NLDKLWTLVSEQTR+ A G P Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAP 27 >AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase E3 component n-recognin 4 protein. Length = 5183 Score = 31.9 bits (69), Expect = 3.3 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305 T C SLPL ++L + L+++ ++GDL +WS + P++ R P L+ Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319 >AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligase E3 component n-recognin 4 protein. Length = 1672 Score = 31.9 bits (69), Expect = 3.3 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305 T C SLPL ++L + L+++ ++GDL +WS + P++ R P L+ Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535 >AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase E3 component n-recognin 4 protein. Length = 5183 Score = 31.9 bits (69), Expect = 3.3 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305 T C SLPL ++L + L+++ ++GDL +WS + P++ R P L+ Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319 >AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligase E3 component n-recognin 4 protein. Length = 1672 Score = 31.9 bits (69), Expect = 3.3 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305 T C SLPL ++L + L+++ ++GDL +WS + P++ R P L+ Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535 >AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. Length = 5183 Score = 31.9 bits (69), Expect = 3.3 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305 T C SLPL ++L + L+++ ++GDL +WS + P++ R P L+ Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319 >AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein. Length = 1678 Score = 31.9 bits (69), Expect = 3.3 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -3 Query: 445 TGCLGSLPLPSNL*YPALTIL-MSGDLAIWSRCILQPRLFRD*CPKLI 305 T C SLPL ++L + L+++ ++GDL +WS + P++ R P L+ Sbjct: 494 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 541 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 99,515,460 Number of Sequences: 237096 Number of extensions: 1753293 Number of successful extensions: 3120 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3113 length of database: 76,859,062 effective HSP length: 90 effective length of database: 55,520,422 effective search space used: 11603768198 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -