Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I12
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   114   9e-26
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   111   8e-25
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    46   3e-05
At2g16100.1 68415.m01846 hypothetical protein                          29   5.6  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  114 bits (274), Expect = 9e-26
 Identities = 62/142 (43%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           FH  +NK FCP++NLDKLW+LV E  + K  S+ D  VP     Q    +V  +   P+ 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPEN 117

Query: 440 TCH-SKSKVLLKISREENQGCG 502
                K+K++ K + ++ +  G
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAG 139


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  111 bits (266), Expect = 8e-25
 Identities = 61/142 (42%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 259
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 260 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPAHQYCQSWILQVARQRQTPQT 439
           FH  +NK FCP++NLDKLW+LV E  + K  S  D  VP     Q    +V  +   P+ 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDVTQHGFFKVLGKGHLPEN 117

Query: 440 TCH-SKSKVLLKISREENQGCG 502
                K+K++ K + ++ +  G
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAG 139


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +2

Query: 80  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 253
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 254 RNFHFRKNKNFCPVLNLDKLWTLV 325
           R FH  +NK +C ++NLDKLW++V
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMV 63


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 193 APSQNQHGQVPSWILWQTW 249
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,093
Number of Sequences: 28952
Number of extensions: 242150
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)