Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I11
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
 Frame = +1

Query: 328 PQLDCTTSECDQLCRRFGFSGGICVGGQC--ECGNIHRNADQNENQSTLENCDMREC--- 492
           P+L C  S C+Q C   G +   C    C   C +   N + + N    + C+   C   
Sbjct: 73  PRLKCAASTCNQRCLSGGCTDVACNSHTCLQTCTSNCTNMECHSNTKCTQECEDGACGLA 132

Query: 493 -------DXSCRRIGFPGWPCASMDDAN 555
                  +  CR +G     CAS +  N
Sbjct: 133 TSGSGKAEQICRGVGCKRMQCASAESCN 160


>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 340 CTTSECDQLCRRFGFSGGICVGGQCECGNIHR 435
           C T    Q C RF  +GG+ V  QC C + +R
Sbjct: 76  CPTLRKAQPCNRFCHNGGMPVPNQCYCSSHYR 107


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 385  SGGICVGGQCECGNIHRNADQNENQSTLENCD 480
            +GG CV G C+C   H  A+  E+ +T   C+
Sbjct: 2343 NGGKCVDGVCQCPAGHTGANCQEDPATDSVCE 2374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,838,021
Number of Sequences: 59808
Number of extensions: 524420
Number of successful extensions: 1331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)