Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I11
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z92784-4|CAB07195.1|  180|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   7.6  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   7.6  

>Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical
           protein T26H2.4 protein.
          Length = 330

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 425 IYTEMRTKMKINLPSKIVICENVIXRVAELDFLXGRVRQW 544
           I T MRT +KINL  ++V CE ++     LD L   V+ W
Sbjct: 53  IVTVMRTMLKINLHFRVVTCE-LVLNYENLDELPHSVKIW 91


>Z92784-4|CAB07195.1|  180|Caenorhabditis elegans Hypothetical
           protein F31C3.5 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 522 WXAVCVNGRCXCDIIAXNI*LIWMKIDLLSKIVIAEDAISXVAKL 656
           W A+ +  +  C ++A      WM +D L KI+ +E     +AKL
Sbjct: 48  WTAILMKRKHNCKVVAPQ----WMDVDELKKILTSETESQGLAKL 88


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 CTTSECDQLCRRFGFSGGICVGGQCEC 420
           CT ++C+ +C     +GG  VG +C C
Sbjct: 673 CTNADCEGMCILSKDNGGFGVGYKCAC 699


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 CTTSECDQLCRRFGFSGGICVGGQCEC 420
           CT ++C+ +C     +GG  VG +C C
Sbjct: 673 CTNADCEGMCILSKDNGGFGVGYKCAC 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,070,075
Number of Sequences: 27780
Number of extensions: 394537
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)