BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I10 (890 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.51 SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 29 1.2 SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 2.7 >SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 168 Score = 29.9 bits (64), Expect = 0.51 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +2 Query: 293 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 430 KDG+++ +LN FAK L + + +A + + IE+++ E Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156 >SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schizosaccharomyces pombe|chr 2|||Manual Length = 501 Score = 28.7 bits (61), Expect = 1.2 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 272 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 427 +D + A+ + SVLQ+L+ + +QG LG N AL Q + QN++ E Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132 >SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 631 Score = 27.5 bits (58), Expect = 2.7 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 404 ASTVPKPPWPCRSRLRALPG 345 AST+ K PWP + L +PG Sbjct: 38 ASTLEKEPWPASTALLVMPG 57 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,411,802 Number of Sequences: 5004 Number of extensions: 36312 Number of successful extensions: 124 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 124 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 448490560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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