Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I09
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0682 - 5141194-5141251,5141526-5141839                           33   0.44 
07_03_0559 + 19475893-19476783                                         30   2.3  
07_03_0560 + 19479597-19480667                                         30   3.1  

>07_01_0682 - 5141194-5141251,5141526-5141839
          Length = 123

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 20/41 (48%), Positives = 20/41 (48%)
 Frame = -1

Query: 847 GGGEXGXGPXGGV*RGGXPRGXF*XPPGGVAPPXXXGGGXF 725
           GGG  G GP GG   GG P G F    GGV      GGG F
Sbjct: 68  GGGAAGFGPFGGFGAGGGPFGGF---GGGVG--LGGGGGGF 103


>07_03_0559 + 19475893-19476783
          Length = 296

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/39 (46%), Positives = 18/39 (46%)
 Frame = -1

Query: 847 GGGEXGXGPXGGV*RGGXPRGXF*XPPGGVAPPXXXGGG 731
           GGG  G G  GGV  GG   G F    GGV      GGG
Sbjct: 123 GGGGFGGGSGGGVGGGGGQGGGF-GAGGGVGGGSGTGGG 160



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = -1

Query: 847 GGGEXGXGPXGGV*RGGXPRGXF*XPPGGVAPPXXXGGG 731
           GGG  G G  GG+  GG   G F    GGV      GGG
Sbjct: 165 GGGGFGGGGGGGIGGGGGKGGGF-GAGGGVGGAAGGGGG 202


>07_03_0560 + 19479597-19480667
          Length = 356

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 18/39 (46%), Positives = 18/39 (46%)
 Frame = -1

Query: 847 GGGEXGXGPXGGV*RGGXPRGXF*XPPGGVAPPXXXGGG 731
           GGG  G G  GGV  GG   G F    GGV      GGG
Sbjct: 128 GGGGLGGGGGGGVGGGGGQGGGF-GAGGGVGGGSGTGGG 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,486
Number of Sequences: 37544
Number of extensions: 295320
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)