Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I09
         (949 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.45 
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   9.6  

>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 32.7 bits (71), Expect = 0.45
 Identities = 31/111 (27%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
 Frame = -2

Query: 768 RGGWPPPXXXG--GGIFXXXFSXXXXXXXXXXXXXXXXLXXGXGPXGGPX--GXKXFFPG 601
           +GG PPP   G  GG                          G G  GGP   G    +  
Sbjct: 499 QGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQ 558

Query: 600 XPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGAQKXNPXSPGGG 448
            PP  G+    P    G   PPP   G  G    G G G     P  PG G
Sbjct: 559 PPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGG---GPPPPGAG 606



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +1

Query: 532 GXGXXXSPPPXGGXXVFPXXXGXPREKTFXP-XGPXXGPXTPXKGPXW 672
           G G    PPP G     P   G  +E    P  G   GP  P  G  W
Sbjct: 562 GAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQGW 609


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 511 PXXPGFXGXGXXXSPPPXGGXXVFPXXXGXPRE 609
           P  PGF G      PPP G         G PRE
Sbjct: 201 PPPPGFPGGAPPPPPPPFGAPPPPALNGGPPRE 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,839
Number of Sequences: 59808
Number of extensions: 215616
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)