Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I09
(949 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.8
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 4.9
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 4.9
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 4.9
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 4.9
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 4.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.4
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 28 8.5
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 28 8.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 8.5
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = -2
Query: 642 PXGGPXGXKXFFPGXPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGA 481
P GGP G F P P G P PPP G PG +G A
Sbjct: 426 PQGGPGG---FGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNPFARGPSA 476
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -2
Query: 606 PGXPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGAQKXNPXSPG 454
PG PP + TP PP G PG G G NP SPG
Sbjct: 96 PGHPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNG----NPGSPG 142
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -2
Query: 606 PGXPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGAQKXNPXSPG 454
PG PP + TP PP G PG G G NP SPG
Sbjct: 129 PGRPPQQPCDPITPPPCQPCPQGPPGPPGPPGPSGDAGGNG----NPGSPG 175
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 677 PXQXGPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
P + GP G GP GP G F+ G P G P G P PG G
Sbjct: 343 PGRDGP-KGNSGPP-GPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAG 396
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 677 PXQXGPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
P + GP G GP GP G F+ G P G P G P PG G
Sbjct: 342 PGRDGP-KGNSGPP-GPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAG 395
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 677 PXQXGPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
P + GP G GP GP G F+ G P G P G P PG G
Sbjct: 342 PGRDGP-KGNSGPP-GPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAG 395
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 677 PXQXGPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
P + GP G GP GP G F+ G P G P G P PG G
Sbjct: 343 PGRDGP-KGNSGPP-GPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAG 396
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 677 PXQXGPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
P + GP G GP GP G F+ G P G P G P PG G
Sbjct: 379 PGRDGP-KGNSGPP-GPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGYPGAPGPAG 432
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -1
Query: 319 PIXPKKXFFXPXXXGGXPXPPXXFXXXGXXXPPPKGXXPXPG 194
P P F P G P PP G PPP P G
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -1
Query: 319 PIXPKKXFFXPXXXGGXPXPPXXFXXXGXXXPPPKGXXPXPG 194
P P F P G P PP G PPP P G
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 606 PGXPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGAQKXNPXSPG 454
PG PP + TP PP G P G G NP SPG
Sbjct: 129 PGRPPQQPCDPITPPPCQPCPQGPPGPPGPP----GPSGDAGSNGNPGSPG 175
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -3
Query: 653 GVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
G GP GP G P G P GGGE P PG G
Sbjct: 178 GPAGPAGGPG-----PAGPPGPAGADGNTPSGGGEGPAGPPGPPGPAG 220
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/66 (33%), Positives = 25/66 (37%)
Frame = -2
Query: 645 GPXGGPXGXKXFFPGXPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGAQKXNP 466
GP G P G + G P GE T PP TG PG G +G K +
Sbjct: 176 GPPG-PPGVR----GEPGSPGEKGPTGDRGKVLNGAPPGPTGPPG-KVGPRGLSGGKGHD 229
Query: 465 XSPGGG 448
PG G
Sbjct: 230 GKPGLG 235
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Frame = -2
Query: 645 GPXG--GPXGXKXFFPGXPPXXGENXXTPLXXXGXXXPPPXKTGXPGVXXGGKGXGAQKX 472
GP G GP G PG P G+ P PP G PG GA
Sbjct: 187 GPDGNAGPAGA----PGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGT 242
Query: 471 NP-XSPGG 451
N SPGG
Sbjct: 243 NTVNSPGG 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,728
Number of Sequences: 27780
Number of extensions: 215688
Number of successful extensions: 686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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