BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I09 (949 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 4.5 At4g01985.1 68417.m00265 expressed protein 29 6.0 At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 29 6.0 >At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family protein Common family members: At4g18570, At4g04980, At5g61090 [Arabidopsis thaliana]; identical to cDNA CHUP1 for actin binding protein GI:28071264 Length = 1004 Score = 29.1 bits (62), Expect = 4.5 Identities = 13/33 (39%), Positives = 13/33 (39%) Frame = -2 Query: 288 PXXXGXGPXPXXXFXXXGPXXPPQRGXPXPXXP 190 P G GP P GP PP G P P P Sbjct: 672 PPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPP 704 >At4g01985.1 68417.m00265 expressed protein Length = 579 Score = 28.7 bits (61), Expect = 6.0 Identities = 18/43 (41%), Positives = 18/43 (41%) Frame = -1 Query: 859 VXXXGGGEXGXGPXGGV*RGGXPRGXF*XPPGGVAPPXXXGGG 731 V GGG G G GGV GG G GG A GGG Sbjct: 63 VGGGGGGGGGIGGSGGVGAGGGVGGGAGGAIGGGASGGAGGGG 105 >At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to NtN2 [Medicago truncatula] GI:3776084; contains Pfam profile PF00917: MATH domain Length = 420 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/52 (36%), Positives = 20/52 (38%) Frame = -3 Query: 665 GPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510 GP G GP GP G RG P G P G G P +PG G Sbjct: 37 GPGFGPGGPGFGPGGPGFGGRG-PRGPG---FGPRGPGPWSGPRGPRPGGGG 84 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,162,582 Number of Sequences: 28952 Number of extensions: 177156 Number of successful extensions: 337 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 323 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2275754832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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