Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I09
         (949 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   4.5  
At4g01985.1 68417.m00265 expressed protein                             29   6.0  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    29   6.0  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 288 PXXXGXGPXPXXXFXXXGPXXPPQRGXPXPXXP 190
           P   G GP P       GP  PP  G P P  P
Sbjct: 672 PPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPP 704


>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/43 (41%), Positives = 18/43 (41%)
 Frame = -1

Query: 859 VXXXGGGEXGXGPXGGV*RGGXPRGXF*XPPGGVAPPXXXGGG 731
           V   GGG  G G  GGV  GG   G      GG A     GGG
Sbjct: 63  VGGGGGGGGGIGGSGGVGAGGGVGGGAGGAIGGGASGGAGGGG 105


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = -3

Query: 665 GPFXGVXGPXXGPXGXXVFSRGXPXXXGKTXXPPXGGGEXXXPXPXKPGXXG 510
           GP  G  GP  GP G     RG P   G     P G G    P   +PG  G
Sbjct: 37  GPGFGPGGPGFGPGGPGFGGRG-PRGPG---FGPRGPGPWSGPRGPRPGGGG 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,162,582
Number of Sequences: 28952
Number of extensions: 177156
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)