Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I07
         (1546 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4QE97 Cluster: Formin, putative; n=3; Leishmania|Rep: ...    27   3.3  

>UniRef50_Q4QE97 Cluster: Formin, putative; n=3; Leishmania|Rep:
           Formin, putative - Leishmania major
          Length = 1300

 Score = 27.1 bits (57), Expect(3) = 3.3
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +1

Query: 715 PXXPNXAXXXKDPAGXPPP-TXXQXTPTGGKQXP 813
           P  P  +     PAG PPP       PTGG + P
Sbjct: 630 PPPPGGSGVSSPPAGLPPPHPPGLPPPTGGPKQP 663



 Score = 24.2 bits (50), Expect(3) = 3.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 937  PPPPPPXXXXXXRXRXGGGXXXSXG 1011
            PPPPPP        R G G     G
Sbjct: 668  PPPPPPPPPPPPPPRMGNGPPPPPG 692



 Score = 21.4 bits (43), Expect(3) = 3.3
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 916 PXXXXXXPPPPPP 954
           P      PPPPPP
Sbjct: 656 PTGGPKQPPPPPP 668


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.305    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,491,364
Number of Sequences: 1657284
Number of extensions: 7546133
Number of successful extensions: 16525
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14903
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 165344584750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)