Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I07
         (1546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   2.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   2.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   2.0  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    29   8.8  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    29   8.8  

>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.1 bits (57), Expect(2) = 2.0
 Identities = 24/87 (27%), Positives = 27/87 (31%)
 Frame = +1

Query: 553 GPQKRXRNXPXKKEXGXRXGXXTRPPRXKTKAXXGXPHTGGQXGGXXXXXAXXXPXXPNX 732
           G Q++ +N    K      G    PP  K     G P   G  G      A   P  P  
Sbjct: 237 GQQQQTQNGFRGKRQAPPAGSPPPPPPPK-----GSPPLAGS-GSPPPPPAAGSPPPPRT 290

Query: 733 AXXXKDPAGXPPPTXXQXTPTGGKQXP 813
                 P G PPP      P GG   P
Sbjct: 291 GSPPPPPTGSPPP-----PPAGGSPPP 312



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 907 GXGPXXXXXXPPPPPP 954
           G  P      PPPPPP
Sbjct: 308 GSPPPPRAGSPPPPPP 323


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.1 bits (57), Expect(2) = 2.0
 Identities = 24/87 (27%), Positives = 27/87 (31%)
 Frame = +1

Query: 553 GPQKRXRNXPXKKEXGXRXGXXTRPPRXKTKAXXGXPHTGGQXGGXXXXXAXXXPXXPNX 732
           G Q++ +N    K      G    PP  K     G P   G  G      A   P  P  
Sbjct: 222 GQQQQTQNGFRGKRQAPPAGSPPPPPPPK-----GSPPLAGS-GSPPPPPAAGSPPPPRT 275

Query: 733 AXXXKDPAGXPPPTXXQXTPTGGKQXP 813
                 P G PPP      P GG   P
Sbjct: 276 GSPPPPPTGSPPP-----PPAGGSPPP 297



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 907 GXGPXXXXXXPPPPPP 954
           G  P      PPPPPP
Sbjct: 293 GSPPPPRAGSPPPPPP 308


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.1 bits (57), Expect(2) = 2.0
 Identities = 24/87 (27%), Positives = 27/87 (31%)
 Frame = +1

Query: 553 GPQKRXRNXPXKKEXGXRXGXXTRPPRXKTKAXXGXPHTGGQXGGXXXXXAXXXPXXPNX 732
           G Q++ +N    K      G    PP  K     G P   G  G      A   P  P  
Sbjct: 216 GQQQQTQNGFRGKRQAPPAGSPPPPPPPK-----GSPPLAGS-GSPPPPPAAGSPPPPRT 269

Query: 733 AXXXKDPAGXPPPTXXQXTPTGGKQXP 813
                 P G PPP      P GG   P
Sbjct: 270 GSPPPPPTGSPPP-----PPAGGSPPP 291



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 907 GXGPXXXXXXPPPPPP 954
           G  P      PPPPPP
Sbjct: 287 GSPPPPRAGSPPPPPP 302


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = -3

Query: 812 GXCFPPVGVXCXXVGGGXPAGSLXXXAXFGXXGXXXAXXXXXPPXCPP 669
           G C PP    C   GGG P  S    A  G  G   A     PP  PP
Sbjct: 25  GGCCPPSQPSC---GGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPP 69


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = -3

Query: 812 GXCFPPVGVXCXXVGGGXPAGSLXXXAXFGXXGXXXAXXXXXPPXCPP 669
           G C PP    C   GGG P  S    A  G  G   A     PP  PP
Sbjct: 25  GGCCPPSQPSC---GGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPP 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.305    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,363
Number of Sequences: 27780
Number of extensions: 196792
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)