Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I06
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   180   2e-45
U61953-13|AAO91705.1|  219|Caenorhabditis elegans Hypothetical p...    28   8.1  
U61953-12|AAC48073.1|  348|Caenorhabditis elegans Hypothetical p...    28   8.1  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  180 bits (437), Expect = 2e-45
 Identities = 91/135 (67%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
 Frame = +1

Query: 79  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 255
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 256 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXX 435
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA            AQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 436 XXXXMKIGRIEDVTP 480
               MKIGRIEDVTP
Sbjct: 121 ARAGMKIGRIEDVTP 135


>U61953-13|AAO91705.1|  219|Caenorhabditis elegans Hypothetical
           protein R08C7.2b protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 137 WGPRVTWTSSLATLFFLGAMAQPLGV 60
           W P +T T+ + T+F +GA+  P+GV
Sbjct: 44  WQPILTATTVIPTVFVIGAIFLPIGV 69


>U61953-12|AAC48073.1|  348|Caenorhabditis elegans Hypothetical
           protein R08C7.2a protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 137 WGPRVTWTSSLATLFFLGAMAQPLGV 60
           W P +T T+ + T+F +GA+  P+GV
Sbjct: 44  WQPILTATTVIPTVFVIGAIFLPIGV 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,516,975
Number of Sequences: 27780
Number of extensions: 346405
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)