BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I06 (913 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00033-5|AAC48301.1| 152|Caenorhabditis elegans Ribosomal prote... 180 2e-45 U61953-13|AAO91705.1| 219|Caenorhabditis elegans Hypothetical p... 28 8.1 U61953-12|AAC48073.1| 348|Caenorhabditis elegans Hypothetical p... 28 8.1 >U00033-5|AAC48301.1| 152|Caenorhabditis elegans Ribosomal protein, small subunitprotein 14 protein. Length = 152 Score = 180 bits (437), Expect = 2e-45 Identities = 91/135 (67%), Positives = 100/135 (74%), Gaps = 1/135 (0%) Frame = +1 Query: 79 MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 255 MAP RK K +E+ V+LGPQ GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG Sbjct: 1 MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60 Query: 256 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXX 435 MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA AQ Sbjct: 61 MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120 Query: 436 XXXXMKIGRIEDVTP 480 MKIGRIEDVTP Sbjct: 121 ARAGMKIGRIEDVTP 135 >U61953-13|AAO91705.1| 219|Caenorhabditis elegans Hypothetical protein R08C7.2b protein. Length = 219 Score = 28.3 bits (60), Expect = 8.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -3 Query: 137 WGPRVTWTSSLATLFFLGAMAQPLGV 60 W P +T T+ + T+F +GA+ P+GV Sbjct: 44 WQPILTATTVIPTVFVIGAIFLPIGV 69 >U61953-12|AAC48073.1| 348|Caenorhabditis elegans Hypothetical protein R08C7.2a protein. Length = 348 Score = 28.3 bits (60), Expect = 8.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -3 Query: 137 WGPRVTWTSSLATLFFLGAMAQPLGV 60 W P +T T+ + T+F +GA+ P+GV Sbjct: 44 WQPILTATTVIPTVFVIGAIFLPIGV 69 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,516,975 Number of Sequences: 27780 Number of extensions: 346405 Number of successful extensions: 820 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 819 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2328783996 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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