Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_I06
(913 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 174 8e-44
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 173 1e-43
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 173 2e-43
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 36 0.037
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 29 5.7
At3g56410.2 68416.m06274 expressed protein 28 9.9
At3g56410.1 68416.m06273 expressed protein 28 9.9
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 174 bits (423), Expect = 8e-44
Identities = 88/134 (65%), Positives = 98/134 (73%)
Frame = +1
Query: 79 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 258
M+ RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 259 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 438
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 439 XXXMKIGRIEDVTP 480
MKIGRIEDVTP
Sbjct: 120 RSGMKIGRIEDVTP 133
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 173 bits (422), Expect = 1e-43
Identities = 88/134 (65%), Positives = 97/134 (72%)
Frame = +1
Query: 79 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 258
M+ RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 259 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 438
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 439 XXXMKIGRIEDVTP 480
MKIGRIEDVTP
Sbjct: 120 RSGMKIGRIEDVTP 133
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 173 bits (420), Expect = 2e-43
Identities = 87/134 (64%), Positives = 97/134 (72%)
Frame = +1
Query: 79 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 258
M+ RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 259 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 438
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 439 XXXMKIGRIEDVTP 480
MKIGRIEDVTP
Sbjct: 120 RSGMKIGRIEDVTP 133
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 35.9 bits (79), Expect = 0.037
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 151 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 330
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249
Query: 331 CKTLGITALHIKL 369
K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 760 FTNKAFFSLHFSCGLS 713
+ N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 300 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 458
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 300 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 458
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 993 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,959
Number of Sequences: 28952
Number of extensions: 315211
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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