Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I05
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    29   0.88 
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   3.6  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   8.2  

>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 610 RKLLSAQI*TAHWKKIPVLIPWDPDTEP 693
           +KLL       H K IP L+ W+PD  P
Sbjct: 286 QKLLPQNCPEGHAKMIPCLLAWNPDVRP 313


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 305 HRLEQ-LH-PMTSQTSGSIGHMSYCGIPLLVFSK 210
           H LE+ LH P + QTS     ++Y G PL++F +
Sbjct: 221 HSLEKSLHKPASLQTSDKRSLLAYTGFPLIIFGE 254


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -3

Query: 342 VMFKFLKRITTPASFGAITSNDVTN*WIDRPYVVLWYPFTGFLQKLLCRTAKALHVTKFA 163
           ++  FL+    P   G +T  D       R Y+V +    G +QK L +  +   V  F 
Sbjct: 704 IVTTFLRSNVLPEQIGIVTPYDG-----QRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQ 758

Query: 162 GF*KSISIGSHV-SSKHK 112
           G  K   I S V SS+H+
Sbjct: 759 GREKDFIILSCVRSSEHQ 776


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 465 DCLVNSITMSPTICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTPASFGA 292
           + L N + + P +  S    SSTVL   + W + I  F   +    L  + T A+FGA
Sbjct: 351 ELLFNPMELFPQVINSCSPSSSTVLCETTFWVTAIVLFTSAL----LGLLLTSATFGA 404


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 434 GDIVIELTKQSKSFTGLYTADTNVIGAVRYGYNLKND 544
           G IVI L    +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,125
Number of Sequences: 5004
Number of extensions: 73222
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)