BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I05 (887 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 29 0.88 SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 27 3.6 SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.6 SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 26 6.2 SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 8.2 >SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosaccharomyces pombe|chr 2|||Manual Length = 559 Score = 29.1 bits (62), Expect = 0.88 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 610 RKLLSAQI*TAHWKKIPVLIPWDPDTEP 693 +KLL H K IP L+ W+PD P Sbjct: 286 QKLLPQNCPEGHAKMIPCLLAWNPDVRP 313 >SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 27.1 bits (57), Expect = 3.6 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = -1 Query: 305 HRLEQ-LH-PMTSQTSGSIGHMSYCGIPLLVFSK 210 H LE+ LH P + QTS ++Y G PL++F + Sbjct: 221 HSLEKSLHKPASLQTSDKRSLLAYTGFPLIIFGE 254 >SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 925 Score = 27.1 bits (57), Expect = 3.6 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = -3 Query: 342 VMFKFLKRITTPASFGAITSNDVTN*WIDRPYVVLWYPFTGFLQKLLCRTAKALHVTKFA 163 ++ FL+ P G +T D R Y+V + G +QK L + + V F Sbjct: 704 IVTTFLRSNVLPEQIGIVTPYDG-----QRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQ 758 Query: 162 GF*KSISIGSHV-SSKHK 112 G K I S V SS+H+ Sbjct: 759 GREKDFIILSCVRSSEHQ 776 >SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr 2|||Manual Length = 667 Score = 26.2 bits (55), Expect = 6.2 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -3 Query: 465 DCLVNSITMSPTICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTPASFGA 292 + L N + + P + S SSTVL + W + I F + L + T A+FGA Sbjct: 351 ELLFNPMELFPQVINSCSPSSSTVLCETTFWVTAIVLFTSAL----LGLLLTSATFGA 404 >SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 743 Score = 25.8 bits (54), Expect = 8.2 Identities = 12/37 (32%), Positives = 16/37 (43%) Frame = +2 Query: 434 GDIVIELTKQSKSFTGLYTADTNVIGAVRYGYNLKND 544 G IVI L +S L+ D I + YG + D Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,471,125 Number of Sequences: 5004 Number of extensions: 73222 Number of successful extensions: 137 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 446488370 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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