Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I05
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    28   0.099
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.70 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 181 QCLSSATEQFLEKTSKGIPQYDIWPIDPLVCDVIGCNCSKRCGSRDTLQKFKH 339
           QC++ A    +   + G+  + I PI+PL  D +    S+  GS    Q++K+
Sbjct: 42  QCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQ--GSVTLRQEYKN 92


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 648 EKDSGTNSLGPRYGAF---ENVKTKQLFVKIAXSCYINVVHNIRAXAKIL 788
           E  S T+S   +Y  F   ENVK K+L + +    +IN  HN +   K L
Sbjct: 188 ENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINTRHNTKNGMKTL 237


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 396 VLALVSIWKSDICWFFRPVM 337
           +L +V IW   I W   PVM
Sbjct: 163 ILFIVLIWTYTIPWALMPVM 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,692
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)