Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I05
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    32   0.44 
At3g10720.2 68416.m01291 pectinesterase, putative contains simil...    31   1.4  
At3g10720.1 68416.m01290 pectinesterase, putative contains simil...    31   1.4  
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    29   3.1  
At3g05620.1 68416.m00624 pectinesterase family protein contains ...    29   5.4  
At1g04620.1 68414.m00456 coenzyme F420 hydrogenase family / dehy...    29   5.4  
At4g00740.1 68417.m00101 dehydration-responsive protein-related ...    28   9.5  

>At5g04970.1 68418.m00526 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 624

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
 Frame = +2

Query: 86  WLL*KYSWFLCLLDTWLPMEMLF*NPANLVTCNALAVRQ----SSFWRKPVKGYHNTTYG 253
           W     S F  + D ++ +++ F N A      A+AVR     S+F+R   +GY +T Y 
Sbjct: 383 WTTYNSSTFAVVGDRFVAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYV 442

Query: 254 LSIH*FVTSLDVIAPND---AGVVIRFKNLNITGLK 352
            S+  F    D+    D         F+N NI   K
Sbjct: 443 HSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIYARK 478


>At3g10720.2 68416.m01291 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 619

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
 Frame = +2

Query: 86  WLL*KYSWFLCLLDTWLPMEMLF*NPANLVTCNALAVRQ----SSFWRKPVKGYHNTTYG 253
           W     S F  + + ++ +++ F N A      A+A+R     SSF+R   +GY +T Y 
Sbjct: 378 WTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYV 437

Query: 254 LSIH*FVTSLDVIAPND---AGVVIRFKNLNITGLK 352
            S+  F    D+    D         F+N NI   K
Sbjct: 438 HSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARK 473


>At3g10720.1 68416.m01290 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 263

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
 Frame = +2

Query: 86  WLL*KYSWFLCLLDTWLPMEMLF*NPANLVTCNALAVRQ----SSFWRKPVKGYHNTTYG 253
           W     S F  + + ++ +++ F N A      A+A+R     SSF+R   +GY +T Y 
Sbjct: 22  WTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYV 81

Query: 254 LSIH*FVTSLDVIAPND---AGVVIRFKNLNITGLK 352
            S+  F    D+    D         F+N NI   K
Sbjct: 82  HSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARK 117


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 100 VFLVFVFARYVASDGDALLKP-CKLGDMQCLSSATEQFLEKTSKGIPQYDIWPIDPLV 270
           + L+  FA  +  DG  L+ P CK+ D        +QFL   S+ +P + I P + L+
Sbjct: 144 ICLLIQFADPLGFDGAVLVAPMCKISDKVRPKWPVDQFLIMISRFLPTWAIVPTEDLL 201


>At3g05620.1 68416.m00624 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 543

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 131 WLPMEMLF*NPANLVTCNALAVR----QSSFWRKPVKGYHNTTYGLSIH*FVTSLDVIAP 298
           ++  ++ F N A      A+A+R    QS+F+R  V+GY +T Y  S+  F    ++   
Sbjct: 328 FIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYRDCEIYGT 387

Query: 299 ND 304
            D
Sbjct: 388 ID 389


>At1g04620.1 68414.m00456 coenzyme F420 hydrogenase family /
           dehydrogenase, beta subunit family contains Pfam
           PF04432: Coenzyme F420 hydrogenase/dehydrogenase, beta
           domain; similar to Coenzyme F420 hydrogenase beta
           subunit (SP:Q00391) {Methanobacterium
           thermoautotrophicum}
          Length = 462

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 277 VIGCNCSKRCGSRDTLQKFKHHGSKEPANI 366
           V+G NC    G+RD L KF    SKEP  +
Sbjct: 230 VLGTNCVDN-GTRDGLDKFLKAASKEPETV 258


>At4g00740.1 68417.m00101 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 130 VASDGDALLKPCKLGDMQCLSSATEQFLEKTSKGIPQYDIW 252
           +A DG+ ++    +GD  CL S  E  LE   + +P  D W
Sbjct: 331 IAVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAW 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,343
Number of Sequences: 28952
Number of extensions: 380243
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)