BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I04 (908 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_0558 + 19461369-19462448 32 0.72 02_04_0400 - 22608519-22608844,22609044-22609122 27 1.4 01_01_0570 - 4231100-4232560 30 2.9 01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 3.9 07_03_1751 - 29215074-29216270 29 6.7 >07_03_0558 + 19461369-19462448 Length = 359 Score = 31.9 bits (69), Expect = 0.72 Identities = 18/52 (34%), Positives = 20/52 (38%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGKXXPH 750 G GG G+ GG G + GG GG G F GGG G H Sbjct: 136 GFGGGGGGGLGGGGGHGGGFGAGGGVGGGAGGGVGGGGGFGGGGGGGLGGGH 187 Score = 28.3 bits (60), Expect = 8.9 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765 G GGA G GG G GG GG G F GG G Sbjct: 116 GFGGGAGAGGGAGGGLGGGGGFGGGGGGGLGGGGGHGGGFGAGGGVG 162 >02_04_0400 - 22608519-22608844,22609044-22609122 Length = 134 Score = 26.6 bits (56), Expect(2) = 1.4 Identities = 17/51 (33%), Positives = 17/51 (33%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGKXXP 753 G GG G GG G GG GG G GGG G P Sbjct: 45 GGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYP 95 Score = 23.0 bits (47), Expect(2) = 1.4 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = -1 Query: 668 GKPYFPPWXGXNXFPXP 618 G Y+PPW G P P Sbjct: 90 GGGYYPPWNGGYYPPGP 106 >01_01_0570 - 4231100-4232560 Length = 486 Score = 29.9 bits (64), Expect = 2.9 Identities = 18/47 (38%), Positives = 19/47 (40%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765 G GGA G+ GG G GG GG G F GGG G Sbjct: 78 GTGGGAAGGLGGGGGGG---GGLGGSGGLGGGGMGGSGGFGGGGGGG 121 Score = 29.5 bits (63), Expect = 3.9 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765 G GG G GG G GG GG F G GGG G Sbjct: 121 GVGGGVGAGFGSGGGVGAGGGLRGGGGVGAGGGGGFGGGAGGGGGIG 167 >01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748, 3324504-3324654,3324740-3324818,3325826-3325934 Length = 578 Score = 29.5 bits (63), Expect = 3.9 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765 G GG G GG G + GG GG + G RGGG G Sbjct: 53 GGGGGGGGGYGGGGVGGGYGGGGGGYG---GGGGGYGGGGRGGGGGG 96 Score = 28.7 bits (61), Expect = 6.7 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Frame = -1 Query: 905 GXXGGARXGVXR-GGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765 G GG G R GG G + GG GG G RGGG G Sbjct: 79 GGGGGGYGGGGRGGGGGGGYGGGGGGGRGGGGGGGGRGGGGRGGGRDG 126 >07_03_1751 - 29215074-29216270 Length = 398 Score = 28.7 bits (61), Expect = 6.7 Identities = 18/47 (38%), Positives = 18/47 (38%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765 G G G GG G F GG GG G F GGGA G Sbjct: 347 GGGGAGAGGGFGGGKGGGFGGGVGGGHGAGGGGAGGGGGF-GGGAGG 392 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,209,913 Number of Sequences: 37544 Number of extensions: 203546 Number of successful extensions: 787 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 731 length of database: 14,793,348 effective HSP length: 82 effective length of database: 11,714,740 effective search space used: 2577242800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -