Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I04
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0558 + 19461369-19462448                                         32   0.72 
02_04_0400 - 22608519-22608844,22609044-22609122                       27   1.4  
01_01_0570 - 4231100-4232560                                           30   2.9  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    29   3.9  
07_03_1751 - 29215074-29216270                                         29   6.7  

>07_03_0558 + 19461369-19462448
          Length = 359

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGKXXPH 750
           G  GG   G+  GG  G    + GG      GG    G F GGG  G    H
Sbjct: 136 GFGGGGGGGLGGGGGHGGGFGAGGGVGGGAGGGVGGGGGFGGGGGGGLGGGH 187



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765
           G  GGA  G   GG  G      GG      GG    G F  GG  G
Sbjct: 116 GFGGGAGAGGGAGGGLGGGGGFGGGGGGGLGGGGGHGGGFGAGGGVG 162


>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 26.6 bits (56), Expect(2) = 1.4
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGKXXP 753
           G  GG   G   GG  G      GG      GG    G   GGG  G   P
Sbjct: 45  GGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYP 95



 Score = 23.0 bits (47), Expect(2) = 1.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 668 GKPYFPPWXGXNXFPXP 618
           G  Y+PPW G    P P
Sbjct: 90  GGGYYPPWNGGYYPPGP 106


>01_01_0570 - 4231100-4232560
          Length = 486

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765
           G  GGA  G+  GG  G      GG      GG    G F GGG  G
Sbjct: 78  GTGGGAAGGLGGGGGGG---GGLGGSGGLGGGGMGGSGGFGGGGGGG 121



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765
           G  GG   G   GG  G      GG      GG  F G   GGG  G
Sbjct: 121 GVGGGVGAGFGSGGGVGAGGGLRGGGGVGAGGGGGFGGGAGGGGGIG 167


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765
           G  GG   G   GG  G +    GG      GG  + G  RGGG  G
Sbjct: 53  GGGGGGGGGYGGGGVGGGYGGGGGGYG---GGGGGYGGGGRGGGGGG 96



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -1

Query: 905 GXXGGARXGVXR-GGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765
           G  GG   G  R GG  G +    GG      GG    G  RGGG  G
Sbjct: 79  GGGGGGYGGGGRGGGGGGGYGGGGGGGRGGGGGGGGRGGGGRGGGRDG 126


>07_03_1751 - 29215074-29216270
          Length = 398

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXG 765
           G  G    G   GG  G F    GG      GG    G F GGGA G
Sbjct: 347 GGGGAGAGGGFGGGKGGGFGGGVGGGHGAGGGGAGGGGGF-GGGAGG 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,913
Number of Sequences: 37544
Number of extensions: 203546
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)