BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_I04 (908 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 29 5.6 At1g34000.2 68414.m04216 light stress-responsive one-helix prote... 28 7.4 At1g34000.1 68414.m04215 light stress-responsive one-helix prote... 28 7.4 At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 28 9.8 At2g30560.1 68415.m03722 glycine-rich protein 28 9.8 >At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ribosomal protein S10 - Lumbricus rubellus, PID:e1329701 Length = 177 Score = 28.7 bits (61), Expect = 5.6 Identities = 18/51 (35%), Positives = 19/51 (37%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGKXXP 753 G GG R G +GG P DF P GG G RG G P Sbjct: 128 GYRGGPRGGDEKGGAPADF-------QPSFQGGGGRPGFGRGAGGYSAAAP 171 >At1g34000.2 68414.m04216 light stress-responsive one-helix protein (OHP2) contains similarity to photosystem II 22 kDa protein GI:6006279 from [Arabidopsis thaliana] Length = 145 Score = 28.3 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = +1 Query: 766 PXAPPPLKXPXKXXPPXXXGXXPP 837 P APP L+ P K PP PP Sbjct: 53 PSAPPTLREPQKPVPPSQPSSSPP 76 >At1g34000.1 68414.m04215 light stress-responsive one-helix protein (OHP2) contains similarity to photosystem II 22 kDa protein GI:6006279 from [Arabidopsis thaliana] Length = 172 Score = 28.3 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = +1 Query: 766 PXAPPPLKXPXKXXPPXXXGXXPP 837 P APP L+ P K PP PP Sbjct: 53 PSAPPTLREPQKPVPPSQPSSSPP 76 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 27.9 bits (59), Expect = 9.8 Identities = 17/44 (38%), Positives = 18/44 (40%) Frame = -1 Query: 893 GARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGK 762 G GV RGG GDF GG G G RGG G+ Sbjct: 5 GGERGVERGGERGDFGRGFGGRGGRGDRGGRGRGG-RGGRRGGR 47 >At2g30560.1 68415.m03722 glycine-rich protein Length = 171 Score = 27.9 bits (59), Expect = 9.8 Identities = 17/48 (35%), Positives = 19/48 (39%) Frame = -1 Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGK 762 G GG G+ GG G + GG GG G GGG GK Sbjct: 81 GKGGGGGGGISGGGAGGK--SGCGGGKSGGGGGGGKNGGGCGGGGGGK 126 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,085,555 Number of Sequences: 28952 Number of extensions: 131874 Number of successful extensions: 321 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 306 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2149324008 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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