Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I04
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...    29   5.6  
At1g34000.2 68414.m04216 light stress-responsive one-helix prote...    28   7.4  
At1g34000.1 68414.m04215 light stress-responsive one-helix prote...    28   7.4  
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)              28   9.8  
At2g30560.1 68415.m03722 glycine-rich protein                          28   9.8  

>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGKXXP 753
           G  GG R G  +GG P DF        P   GG    G  RG G      P
Sbjct: 128 GYRGGPRGGDEKGGAPADF-------QPSFQGGGGRPGFGRGAGGYSAAAP 171


>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 145

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 766 PXAPPPLKXPXKXXPPXXXGXXPP 837
           P APP L+ P K  PP      PP
Sbjct: 53  PSAPPTLREPQKPVPPSQPSSSPP 76


>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 172

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 766 PXAPPPLKXPXKXXPPXXXGXXPP 837
           P APP L+ P K  PP      PP
Sbjct: 53  PSAPPTLREPQKPVPPSQPSSSPP 76


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = -1

Query: 893 GARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGK 762
           G   GV RGG  GDF    GG       G    G  RGG   G+
Sbjct: 5   GGERGVERGGERGDFGRGFGGRGGRGDRGGRGRGG-RGGRRGGR 47


>At2g30560.1 68415.m03722 glycine-rich protein 
          Length = 171

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = -1

Query: 905 GXXGGARXGVXRGGXPGDF*NSXGGXXPXXXGGXXFXGXFRGGGAXGK 762
           G  GG   G+  GG  G   +  GG      GG    G   GGG  GK
Sbjct: 81  GKGGGGGGGISGGGAGGK--SGCGGGKSGGGGGGGKNGGGCGGGGGGK 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,555
Number of Sequences: 28952
Number of extensions: 131874
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)