Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I02
         (907 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   7e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    46   0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    46   0.002
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.012
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.087
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    39   0.20 
UniRef50_Q2C3D2 Cluster: Chitinase, containing dual catalytic do...    35   2.5  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 53.6 bits (123), Expect = 7e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +1

Query: 688 CINESANARGEAVCVLGALPLPRSLTRCARSFGXGXRYXL-TQRR*YGYPQNQGIXQ 855
           CI + A AR EAV VL ALPL RS TRC RS G G      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 21/33 (63%), Positives = 23/33 (69%)
 Frame = +1

Query: 712 RGEAVCVLGALPLPRSLTRCARSFGXGXRYXLT 810
           R   +C  G +PLPRSLTR ARSFG G RY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 23/30 (76%), Positives = 23/30 (76%)
 Frame = +3

Query: 777 VVRXXXXVSXHSKAVIRLSXESGDXAGKNM 866
           VVR    VS HSKAVIRLS ESGD AGKNM
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 491 DPDMIRYIDEFGQTTTXMQ 547
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.087
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 758 ERGSGRAPNTQTASPRALADSLMQ 687
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.7 bits (86), Expect = 0.20
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 620 QVNNNNCIHFMFQVQGEVWXVFSALMNRPTXGERRFAYW 736
           ++ + NC+    +       V +ALMNRPT GERRFAYW
Sbjct: 3   ELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_Q2C3D2 Cluster: Chitinase, containing dual catalytic
           domains; n=3; Vibrionaceae|Rep: Chitinase, containing
           dual catalytic domains - Photobacterium sp. SKA34
          Length = 399

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 140 MKFTVAFALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVD 268
           MK+T+  ALIA  ++ A NS  N  D   G VA    P K+ +
Sbjct: 1   MKYTLLAALIAATSLTACNSSSNSSDDYSGYVAQEPKPAKITE 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,377,673
Number of Sequences: 1657284
Number of extensions: 9471745
Number of successful extensions: 23764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23742
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)