SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I01
         (1059 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55248| Best HMM Match : Adeno_E1A (HMM E-Value=7.5)                 34   0.22 
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   0.92 
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               31   1.6  
SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  31   2.1  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)                   30   2.7  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               30   2.7  
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              30   3.6  
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   4.8  
SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  29   4.8  
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  29   4.8  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   4.8  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               29   4.8  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)                     29   6.3  
SB_45152| Best HMM Match : DUF320 (HMM E-Value=2.9)                    29   6.3  
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)                      29   6.3  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      29   6.3  
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)                  29   6.3  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   6.3  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.3  

>SB_55248| Best HMM Match : Adeno_E1A (HMM E-Value=7.5)
          Length = 198

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 364 DGPXATPPXXXPPXPXPPP-XXPTRPXR 444
           D P ++PP   PP P PPP   P RP R
Sbjct: 141 DSPVSSPPRTPPPEPTPPPTPPPLRPLR 168


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 26.2 bits (55), Expect(2) = 0.92
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPP 420
           P   PP   PP P PPP
Sbjct: 104 PPPPPPPPPPPPPPPPP 120



 Score = 24.2 bits (50), Expect(2) = 0.92
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 397 PPXPXPPPXXPTRP 438
           PP P PPP  P  P
Sbjct: 138 PPPPPPPPPAPCMP 151


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P+ P
Sbjct: 684 PPPPPPPPPPPPPPPPPPQPSTP 706



 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP   T P
Sbjct: 685 PPPPPPPPPPPPPPPPPQPSTPP 707


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 370  PXATPPXXXPPXPXPPPXXPTRP 438
            P + PP   PP P PPP  P  P
Sbjct: 1308 PESPPPPPPPPPPPPPPPLPPTP 1330


>SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 364 DGPXATPPXXXPPXPXPPP-XXPTRP 438
           D P   PP   PP P PPP   P+RP
Sbjct: 53  DPPPPPPPPPPPPPPPPPPSSSPSRP 78


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P + PP   PP P PPP  P  P
Sbjct: 386 PPSPPPPPQPPPPPPPPPPPPPP 408



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 398 PPPPPPPPPPPPPPPPPPPPPAP 420



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 399 PPPPPPPPPPPPPPPPPPPPAPP 421



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 855 PPPPAXXPPPXPPRCRXXXXP 917
           PPPP   PPP PP  R    P
Sbjct: 420 PPPPPPPPPPPPPALRLACAP 440



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPP 392



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPP 393



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPP 403



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 387 PSPPPPPQPPPPPPPPPPPPPPP 409



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 391 PPPQPPPPPPPPPPPPPPPPPPP 413



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 392 PPQPPPPPPPPPPPPPPPPPPPP 414



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 393 PQPPPPPPPPPPPPPPPPPPPPP 415



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 395 PPPPPPPPPPPPPPPPPPPPPPP 417



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 396 PPPPPPPPPPPPPPPPPPPPPPP 418



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 401 PPPPPPPPPPPPPPPPPPAPPPP 423



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 402 PPPPPPPPPPPPPPPPPAPPPPP 424



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 406 PPPPPPPPPPPPPAPPPPPPPPP 428



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 408 PPPPPPPPPPPAPPPPPPPPPPP 430



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 855 PPPPAXXPPPXPP 893
           PPPPA  PPP PP
Sbjct: 415 PPPPAPPPPPPPP 427



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 17/66 (25%), Positives = 17/66 (25%)
 Frame = +3

Query: 858  PPPAXXPPPXPPRCRXXXXPXXXXXXXXXQLSPPTXXXXSXXXHXXXXXXXXXXXXXXXX 1037
            PPP   PPP PP       P         Q  PP                          
Sbjct: 365  PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424

Query: 1038 PPPPRP 1055
            PPPP P
Sbjct: 425  PPPPPP 430



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 855 PPPPAXXPPPXPP 893
           PPPP+  PPP PP
Sbjct: 373 PPPPSPPPPPPPP 385



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 855 PPPPAXXPPPXPP 893
           PPPP+  PPP PP
Sbjct: 384 PPPPSPPPPPQPP 396


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 382 PPXXXPPXPXPPPXXPTRPXRXGXXXXP 465
           PP   P  P PPP  PT+P +      P
Sbjct: 799 PPGARPTPPPPPPGKPTKPTKPSLPPVP 826


>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
          Length = 593

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 349 TXXXXDGPXATPPXXXPPXPXPPPXXPTRP 438
           T      P   PP   PP P PPP  P  P
Sbjct: 457 TEGVGQAPPPPPPPPPPPPPPPPPPPPPPP 486



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPT 432
           P   PP   PP P PPP  PT
Sbjct: 475 PPPPPPPPPPPPPFPPPPPPT 495



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 465 PPPPPPPPPPPPPPPPPPPPPPP 487



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 470 PPPPPPPPPPPPPPPPPPFPPPP 492



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 471 PPPPPPPPPPPPPPPPPFPPPPP 493



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 467 PPPPPPPPPPPPPPPPPPPPPFP 489



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PPP  P  P
Sbjct: 468 PPPPPPPPPPPPPPPPPPPPFPP 490


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 364 DGPXATPPXXXPPXPXPPPXXPTRPXRXGXXXXP 465
           DG    PP   PP   PPP  P  P   G    P
Sbjct: 298 DGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAP 331


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 855 PPPPAXXPPPXPP 893
           PPPPA  PPP PP
Sbjct: 427 PPPPAPLPPPPPP 439


>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 855 PPPPAXXPPPXPP 893
           PPPPA  PPP PP
Sbjct: 234 PPPPAAAPPPPPP 246



 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 852 TPPPPAXXPPPXPPRCRXXXXP 917
           TPPPPA   PP PP       P
Sbjct: 224 TPPPPAAPAPPPPPAAAPPPPP 245


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 382 PPXXXPPXPXPPPXXPTRPXR 444
           PP   PP P PPP  P+ P +
Sbjct: 2   PPPPPPPGPPPPPSAPSGPVK 22


>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 276

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 382 PPXXXPPXPXPPPXXPTRPXRXG 450
           PP   PP P PPP  P  P   G
Sbjct: 64  PPTLPPPPPPPPPPLPPPPPSGG 86


>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 500

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 382 PPXXXPPXPXPPPXXPTRPXRXG 450
           PP   PP P PPP  P  P   G
Sbjct: 288 PPTLPPPPPPPPPPLPPPPPSGG 310


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 855 PPPPAXXPPPXPPRCRXXXXP 917
           PPPP   PPP PP+ +    P
Sbjct: 360 PPPPIAMPPPAPPKGKAMVKP 380


>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 916 GXXXXRQRGGXGGGXXAGGGG 854
           G    R+RGG GGG   GGGG
Sbjct: 92  GGGGRRERGGRGGGGGYGGGG 112


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 901  RQRGGXGGGXXAGGGGVXR 845
            R+RGG GGG   GGGG  R
Sbjct: 1000 RRRGGGGGGGGGGGGGGGR 1018


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRP 438
           P   PP   PP P PP   P RP
Sbjct: 207 PPPRPPPSPPPPPPPPSPSPPRP 229



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 370 PXATPPXXXPPXPXPPPXXPTRPXR 444
           P   PP   P  P PPP  P  P R
Sbjct: 215 PPPPPPPPSPSPPRPPPPPPPSPPR 239


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 846 RXTPPPPAXXPPPXPP 893
           R  PPPP   PPP PP
Sbjct: 865 RRPPPPPPPPPPPPPP 880



 Score = 29.1 bits (62), Expect = 6.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 846 RXTPPPPAXXPPPXPP 893
           R  PPPP   PPP PP
Sbjct: 866 RPPPPPPPPPPPPPPP 881


>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
          Length = 264

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 855 PPPPAXXPPPXPPRCRXXXXP 917
           PPPP   PPP PP  +    P
Sbjct: 81  PPPPPPPPPPPPPGAKKPDDP 101



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 376 ATPPXXXPPXPXPPPXXPTRP 438
           ATPP    P P PPP  P  P
Sbjct: 71  ATPPPLCAPPPPPPPPPPPPP 91


>SB_45152| Best HMM Match : DUF320 (HMM E-Value=2.9)
          Length = 293

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 439 GAW*GXGGGAXGXGVWXGGGSLXVHLXXXG 350
           G W G GGG  G G + GGGS   H    G
Sbjct: 233 GVW-GNGGGGGGGGGYSGGGSGNPHYYACG 261


>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
          Length = 465

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 855 PPPPAXXPPPXPPRCRXXXXP 917
           PPPP   PPP PP  +    P
Sbjct: 282 PPPPPPPPPPPPPGAKKPDDP 302



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 376 ATPPXXXPPXPXPPPXXPTRP 438
           ATPP    P P PPP  P  P
Sbjct: 272 ATPPPLCAPPPPPPPPPPPPP 292


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 901 RQRGGXGGGXXAGGGG 854
           R+RGG GGG   GGGG
Sbjct: 511 RRRGGGGGGGGGGGGG 526


>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
          Length = 253

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 901 RQRGGXGGGXXAGGGG 854
           R+RGG GGG   GGGG
Sbjct: 161 RRRGGGGGGGGGGGGG 176


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 852 TPPPPAXXPPPXPP 893
           +PPPP+  PPP PP
Sbjct: 187 SPPPPSGGPPPPPP 200


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 370  PXATPPXXXPPXPXPPPXXPT 432
            P ++P    PP P PPP  PT
Sbjct: 1167 PPSSPSPPPPPPPPPPPPTPT 1187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,195
Number of Sequences: 59808
Number of extensions: 152737
Number of successful extensions: 3045
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2338
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3189638717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -