Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_I01
         (1059 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 852 TPPPPAXXPPPXPP 893
           TPP PA  PPP PP
Sbjct: 337 TPPKPA--PPPPPP 348



 Score = 23.0 bits (47), Expect = 4.6
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +1

Query: 367 GPXATPPXXXPPXPXPPPXXP 429
           G   TPP   PP P P    P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 397 PPXPXPPPXXPT 432
           PP P PPP  P+
Sbjct: 338 PPKPAPPPPPPS 349


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 846 RXTPPPPAXXPPPXPP 893
           R +PP P+  PPP  P
Sbjct: 36  RGSPPNPSQGPPPGGP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,044
Number of Sequences: 438
Number of extensions: 2578
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35306793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)