Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H24
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    85   1e-17
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    83   6e-17
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   3.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   5.1  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   8.8  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 42/90 (46%), Positives = 58/90 (64%)
 Frame = +1

Query: 316 TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQT 495
           T+++K+EG   + +A FY GK   YVY++ K        RG  +K+R IWG + RPHG +
Sbjct: 28  TSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV------RG--SKIRVIWGTIARPHGNS 79

Query: 496 LGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
            G+VRA+F  NLPA+  G  +RVMLYPS I
Sbjct: 80  -GAVRARFVHNLPAKTFGSSLRVMLYPSNI 108


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 83.0 bits (196), Expect = 6e-17
 Identities = 41/90 (45%), Positives = 58/90 (64%)
 Frame = +1

Query: 316 TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQT 495
           T+L+K+EG   + +A FY GK   +VY++ K  P+ G      +K+R IWG V+RPHG +
Sbjct: 28  TSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--PVRG------SKIRVIWGTVSRPHGNS 79

Query: 496 LGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
            G VRA+F  NLP +  G  +RVMLYPS +
Sbjct: 80  -GVVRARFTHNLPPKTFGASLRVMLYPSNV 108


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 474 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 370
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 277 VNTALCVQPCRGGALMLCEGPLW 209
           V+++LC  PC G   ++C G L+
Sbjct: 90  VSSSLCTTPCPGYGSLMCGGDLY 112


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 136 TPSKLXAPKSKSGPRAGSXQLLVEPTKVLRKASKPRH 246
           TPSK+    S S PR         P  + R  S P H
Sbjct: 378 TPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSISNPLH 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,547
Number of Sequences: 5004
Number of extensions: 47598
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)