Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H24
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 94 2e-19
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 91 9e-19
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 75 1e-13
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 32 0.58
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 4.1
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 29 4.1
09_01_0025 - 441528-444284 29 5.4
09_04_0201 + 15543318-15543488,15543956-15544069 29 7.1
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 7.1
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 9.4
07_03_1061 + 23651404-23651625,23651764-23652954 28 9.4
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 93.9 bits (223), Expect = 2e-19
Identities = 46/91 (50%), Positives = 61/91 (67%)
Frame = +1
Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
NT+L+++EG + + +Y GK YVY+AK ++ GG T R IWGKVTRPHG
Sbjct: 31 NTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGN 82
Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
+ G VRAKFKSNLP +MG ++RV +YPS I
Sbjct: 83 S-GVVRAKFKSNLPPASMGRKVRVFMYPSSI 112
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 91.5 bits (217), Expect = 9e-19
Identities = 44/91 (48%), Positives = 61/91 (67%)
Frame = +1
Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
NT+LL++EG + + +YAGK YVY+AK ++ + +R IWGKVTRPHG
Sbjct: 30 NTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGN 81
Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
+ G VRAKF+SNLP +MG ++RV +YPS I
Sbjct: 82 S-GVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 74.5 bits (175), Expect = 1e-13
Identities = 37/78 (47%), Positives = 51/78 (65%)
Frame = +1
Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
NT+LL++EG + + +YAGK YVY+AK ++ + +R IWGKVTRPHG
Sbjct: 30 NTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGN 81
Query: 493 TLGSVRAKFKSNLPAQAM 546
+ G VRAKF+SNLP +M
Sbjct: 82 S-GVVRAKFRSNLPPTSM 98
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 32.3 bits (70), Expect = 0.58
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 412 TPIPGGPRG-KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIR 561
T +PGG R K+ + R + ++ P +T GSV A+ K N + +GH +R
Sbjct: 1097 TALPGGTRDLKRVRFRNL--RLCPPFLETAGSVSARHKQNNGGKRIGHGLR 1145
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 579 GRIQHHSYSVSHSLGREVRLELGSDTAQSLPMW 481
GR+ HHS+ VS L R VRLE T + L W
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE--HKTLKLLKYW 154
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 118 WRLXAQTPSKLXAPKSKSGPRAGSXQLLVEPTKVLRKASK 237
W++ Q+P KL + G Q L++ KVLR++++
Sbjct: 485 WKIHQQSPKKLIKETEPTSSEVGEVQNLLQNEKVLRQSAE 524
>09_01_0025 - 441528-444284
Length = 918
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 382 NACQHKRLHHYGLLLLQP*GERCFSCWLRRPRLYPVNTALCVQPCRGGALMLCE-GP 215
+AC K LH L+LL CF RR + V TA + GGA + C+ GP
Sbjct: 266 HACWSKHLHSDCLVLLDNAHLCCFDLHQRRGSVLRVGTATATE---GGACLSCDYGP 319
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 482 GRVTLPQIARSLVFLPRGPPGIGVLFL 402
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 447 GFFATGTSGNWCPLLSSVHIDAMLA 373
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.3 bits (60), Expect = 9.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 434 VAKKPSCVLSGAR*PAHMGKLWAVSEP--SSSLTSLPRLWDTEYE*C 568
+A +P+CVL G + + W+ ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDV-LDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 481 PHGQTLGSVRAKFKSNLPAQAMGH 552
P G LG+V KSN+PA MG+
Sbjct: 435 PFGNDLGNVDPDIKSNIPASYMGN 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,335,453
Number of Sequences: 37544
Number of extensions: 400349
Number of successful extensions: 1014
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -