Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H24
         (942 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             93   2e-19
SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)             31   1.8  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_25266| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)                    29   4.1  
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   29   7.2  
SB_37490| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             28   9.5  
SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)               28   9.5  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   9.5  
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = +1

Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
           NT+L+K+EG  +R +  FY GK   +VYRAK +T   G    K TKLR IWGKVTR HG 
Sbjct: 26  NTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK--KATKLRVIWGKVTRAHGN 83

Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVM 567
           + G VRAKF+ NLP +AMG  +RV+
Sbjct: 84  S-GVVRAKFRHNLPPKAMGATVRVI 107


>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
          Length = 472

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +1

Query: 175 PRAGSXQLLVEPTKVLRKASKPRHG--RAVRKGPYS----QDISVVYATSTRNTA-LLKV 333
           PR G+  LL E  + LR+A+KPR+G    +R   YS     + S V  T  R+T   L+ 
Sbjct: 13  PRNGAQNLLRESIEFLREANKPRNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRE 72

Query: 334 EGAKDRNDAVFYAGKHC 384
                      Y GK+C
Sbjct: 73  TNNHSNVTERHYNGKYC 89


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +1

Query: 175  PRAGSXQLLVEPTKVLRKASKPRHG--RAVRKGPYS----QDISVVYATSTRNTA-LLKV 333
            PR G+  LL E  + LR+A+KPR+G    +R   YS     + S V  T  R+T   L+ 
Sbjct: 5559 PRNGAQNLLRESIEFLREANKPRNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRE 5618

Query: 334  EGAKDRNDAVFYAGKHC 384
                       Y GK+C
Sbjct: 5619 TNNHSNVTERHYNGKYC 5635


>SB_25266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +1

Query: 175 PRAGSXQLLVEPTKVLRKASKPRHG--RAVRKGPYS----QDISVVYATSTRNTA-LLKV 333
           PR G+  LL E  + LR+A+KPR+G    +R   YS     + S V  T  R+T   L+ 
Sbjct: 101 PRNGAQNLLRESIEFLREANKPRNGDQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRE 160

Query: 334 EGAKDRNDAVFYAGKHC 384
                      Y GK+C
Sbjct: 161 TNNHSNVTERHYNGKYC 177


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +1

Query: 388  YVYRAKKR-TPIPGGPRGKK------TKLRAIWGKVTRPHGQTLGSVRAKF 519
            Y YR + R  P+PG  RG+K      T   A WG V R HG T+ + R  F
Sbjct: 4354 YRYRKQGRPVPVPG-KRGEKVDAYKNTSKYAGWGTVHRVHGDTIQTPRRLF 4403


>SB_27730| Best HMM Match : DUF755 (HMM E-Value=3.9)
          Length = 262

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 175 PRAGSXQLLVEPTKVLRKASKPRHG 249
           PR G+  LL E  + LR+A+KPR+G
Sbjct: 121 PRNGAXNLLRESIEFLREANKPRNG 145


>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 355 DAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLR 456
           D+ F+AG   +     K   P+ GGPR +  +LR
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLR 201


>SB_37490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 394 YRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQTLGSVRAKF 519
           Y  K RT +PGG    KT+ R I GK+    G   G  + KF
Sbjct: 3   YLEKPRT-VPGGGTPIKTQTRVIVGKINFNQGGHFGHDQQKF 43


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 186 LQXAPGGAHKGPSQSIKAPPRQG-CTQRAVFTGYKRGLRNQ 305
           L   PGG+  G S S + PP  G CT R +    K+  + Q
Sbjct: 561 LAKGPGGSQSGSSTSTQQPPEGGNCTWRCLMFLQKKLAKKQ 601


>SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)
          Length = 271

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 536 AGRLDLNLARTLPRVCPCGRVTL 468
           +G+ D+N  R L R+C CGRV+L
Sbjct: 162 SGQADVNF-RKLQRICVCGRVSL 183


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
 Frame = +1

Query: 139 PSKLX--APKSKSGPRAGSXQLLVEPTKVLRKASKPRHGRAVRKGPY-SQDISVVYATST 309
           PSKL   APK +S     +    VEP  V+  ASKP    A     Y +Q+   V + S+
Sbjct: 59  PSKLRLNAPKPQSALVTSTKTKAVEPQSVM--ASKPSSASASPSNTYRTQNTDQVKSGSS 116

Query: 310 RNTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVT 477
            +      +  K  + +   A K     +  K  + I G P GKK +++A+   VT
Sbjct: 117 IHAPTSNKDRIKAVSSSAM-APKTSER-FTTKPGSSI-GAPTGKKDRIKAVSSSVT 169


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 390  IDAMLASIKDCIITVFCSFNLEESGVSRAGC 298
            +D +L+S  DC+I V   FN   + +S A C
Sbjct: 1222 VDTLLSSHPDCLIAVTVDFNPTSTRLSAAKC 1252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,885,853
Number of Sequences: 59808
Number of extensions: 420937
Number of successful extensions: 1010
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)