BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H24 (942 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 122 3e-27 BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 122 3e-27 BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 122 3e-27 BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 122 3e-27 AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 122 3e-27 X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 119 2e-26 AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 81 6e-15 >BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a protein. Length = 110 Score = 122 bits (293), Expect = 3e-27 Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%) Frame = +1 Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438 +S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62 Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 Score = 31.9 bits (69), Expect = 3.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 264 RAVFTGYKRGLRNQHE 311 +A+F GYKRGLRNQ E Sbjct: 8 KAIFAGYKRGLRNQRE 23 >BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. Length = 110 Score = 122 bits (293), Expect = 3e-27 Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%) Frame = +1 Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438 +S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62 Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 Score = 31.9 bits (69), Expect = 3.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 264 RAVFTGYKRGLRNQHE 311 +A+F GYKRGLRNQ E Sbjct: 8 KAIFAGYKRGLRNQRE 23 >BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a protein. Length = 110 Score = 122 bits (293), Expect = 3e-27 Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%) Frame = +1 Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438 +S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62 Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 Score = 31.9 bits (69), Expect = 3.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 264 RAVFTGYKRGLRNQHE 311 +A+F GYKRGLRNQ E Sbjct: 8 KAIFAGYKRGLRNQRE 23 >BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a protein. Length = 110 Score = 122 bits (293), Expect = 3e-27 Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%) Frame = +1 Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438 +S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62 Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 Score = 31.9 bits (69), Expect = 3.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 264 RAVFTGYKRGLRNQHE 311 +A+F GYKRGLRNQ E Sbjct: 8 KAIFAGYKRGLRNQRE 23 >AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting protein 33 protein. Length = 110 Score = 122 bits (293), Expect = 3e-27 Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%) Frame = +1 Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438 +S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62 Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110 Score = 31.9 bits (69), Expect = 3.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 264 RAVFTGYKRGLRNQHE 311 +A+F GYKRGLRNQ E Sbjct: 8 KAIFAGYKRGLRNQRE 23 >X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ribosomal protein L35a. ). Length = 110 Score = 119 bits (286), Expect = 2e-26 Identities = 63/109 (57%), Positives = 73/109 (66%), Gaps = 4/109 (3%) Frame = +1 Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438 +S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PG G Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG---G 62 Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 K K R IWGKVTR HG + G V AKF+SNLPA+A+GHRIRVMLYPSRI Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVLAKFRSNLPAKAIGHRIRVMLYPSRI 110 Score = 31.9 bits (69), Expect = 3.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 264 RAVFTGYKRGLRNQHE 311 +A+F GYKRGLRNQ E Sbjct: 8 KAIFAGYKRGLRNQRE 23 >AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a pseudogene 3 protein. Length = 96 Score = 81.0 bits (191), Expect = 6e-15 Identities = 42/77 (54%), Positives = 50/77 (64%) Frame = +1 Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492 +TALLK+EG +++ FY GK C VY+AK T IPG K K R IWGKVTR H + Sbjct: 23 HTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG---SKPNKSRVIWGKVTRAH-R 78 Query: 493 TLGSVRAKFKSNLPAQA 543 G V AKF SNLPA+A Sbjct: 79 NSGMVAAKFHSNLPAKA 95 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 104,089,011 Number of Sequences: 237096 Number of extensions: 2233566 Number of successful extensions: 13476 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 13176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13457 length of database: 76,859,062 effective HSP length: 90 effective length of database: 55,520,422 effective search space used: 12381054106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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