Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H24
(942 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 122 3e-27
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 122 3e-27
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 122 3e-27
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 122 3e-27
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 122 3e-27
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 119 2e-26
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 81 6e-15
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 122 bits (293), Expect = 3e-27
Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Frame = +1
Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438
+S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62
Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
Score = 31.9 bits (69), Expect = 3.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 264 RAVFTGYKRGLRNQHE 311
+A+F GYKRGLRNQ E
Sbjct: 8 KAIFAGYKRGLRNQRE 23
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 122 bits (293), Expect = 3e-27
Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Frame = +1
Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438
+S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62
Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
Score = 31.9 bits (69), Expect = 3.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 264 RAVFTGYKRGLRNQHE 311
+A+F GYKRGLRNQ E
Sbjct: 8 KAIFAGYKRGLRNQRE 23
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 122 bits (293), Expect = 3e-27
Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Frame = +1
Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438
+S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62
Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
Score = 31.9 bits (69), Expect = 3.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 264 RAVFTGYKRGLRNQHE 311
+A+F GYKRGLRNQ E
Sbjct: 8 KAIFAGYKRGLRNQRE 23
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 122 bits (293), Expect = 3e-27
Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Frame = +1
Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438
+S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62
Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
Score = 31.9 bits (69), Expect = 3.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 264 RAVFTGYKRGLRNQHE 311
+A+F GYKRGLRNQ E
Sbjct: 8 KAIFAGYKRGLRNQRE 23
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 122 bits (293), Expect = 3e-27
Identities = 64/109 (58%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Frame = +1
Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438
+S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG--- 62
Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
K K R IWGKVTR HG + G VRAKF+SNLPA+A+GHRIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
Score = 31.9 bits (69), Expect = 3.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 264 RAVFTGYKRGLRNQHE 311
+A+F GYKRGLRNQ E
Sbjct: 8 KAIFAGYKRGLRNQRE 23
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 119 bits (286), Expect = 2e-26
Identities = 63/109 (57%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Frame = +1
Query: 271 YSQDISVVYATSTRN----TALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRG 438
+S+ I Y RN TALLK+EG R++ FY GK C YVY+AK T PG G
Sbjct: 6 WSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG---G 62
Query: 439 KKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
K K R IWGKVTR HG + G V AKF+SNLPA+A+GHRIRVMLYPSRI
Sbjct: 63 KPNKTRVIWGKVTRAHGNS-GMVLAKFRSNLPAKAIGHRIRVMLYPSRI 110
Score = 31.9 bits (69), Expect = 3.5
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 264 RAVFTGYKRGLRNQHE 311
+A+F GYKRGLRNQ E
Sbjct: 8 KAIFAGYKRGLRNQRE 23
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 81.0 bits (191), Expect = 6e-15
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = +1
Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
+TALLK+EG +++ FY GK C VY+AK T IPG K K R IWGKVTR H +
Sbjct: 23 HTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG---SKPNKSRVIWGKVTRAH-R 78
Query: 493 TLGSVRAKFKSNLPAQA 543
G V AKF SNLPA+A
Sbjct: 79 NSGMVAAKFHSNLPAKA 95
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,089,011
Number of Sequences: 237096
Number of extensions: 2233566
Number of successful extensions: 13476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13457
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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