Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H24
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   108   5e-24
Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   6.4  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   6.4  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  108 bits (260), Expect = 5e-24
 Identities = 59/125 (47%), Positives = 77/125 (61%)
 Frame = +1

Query: 211 TKVLRKASKPRHGRAVRKGPYSQDISVVYATSTRNTALLKVEGAKDRNDAVFYAGKHCVY 390
           T V R+ S P  GR   K  ++        T + +T+LLK+EG  ++ DA FYAGK  VY
Sbjct: 4   TAVARRPSAPTTGRLYVKAIFT-GFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVY 62

Query: 391 VYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQTLGSVRAKFKSNLPAQAMGHRIRVML 570
           +Y+A  +T   G      T+ RAIWGK+TRPHG   G+VRAKF  N+P  A+G RIRV+L
Sbjct: 63  LYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNA-GAVRAKFHHNIPPSALGKRIRVLL 119

Query: 571 YPSRI 585
           YPS I
Sbjct: 120 YPSNI 124


>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +1

Query: 289 VVYATSTRNTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWG 468
           ++Y    +  A  K+  A  R     + G+  + +  AK+R  +P   RG K + +    
Sbjct: 60  IIYVPVPQLKAFHKIHPALVRELEKKFGGRDILIL--AKRRI-LPKPQRGSKARPQ---- 112

Query: 469 KVTRPHGQTLGSVRAKFKSNL--PAQAMGHRIRVML 570
           K  RP  +TL +V   +   L  PA+ +G RIRV L
Sbjct: 113 KQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKL 148


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 483 WAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 367
           W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 852 WIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 483  WAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 367
            W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 963  WIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,310
Number of Sequences: 27780
Number of extensions: 293081
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)