Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H24
         (942 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    86   3e-17
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    86   3e-17
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    85   6e-17
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    85   8e-17
At3g03520.1 68416.m00351 phosphoesterase family protein low simi...    30   1.9  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +1

Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
           NT+L+++EG   + +  +Y GK   Y+Y+AK +           +  R IWGKVTRPHG 
Sbjct: 31  NTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 82

Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
           + G VRAKF SNLP ++MG R+RV +YPS I
Sbjct: 83  S-GVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 43/91 (47%), Positives = 57/91 (62%)
 Frame = +1

Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
           NT+L++VEG     +  +Y GK   Y+Y+AK +           +  R IWGKVTRPHG 
Sbjct: 31  NTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 82

Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
           + G VRAKF SNLP ++MG R+RV +YPS I
Sbjct: 83  S-GVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 41/91 (45%), Positives = 58/91 (63%)
 Frame = +1

Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
           NT+L+++EG   + +  +Y GK   Y+Y+AK +           +  R IWGKVTRPHG 
Sbjct: 30  NTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 81

Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
           + G VR+KF SNLP ++MG R+RV +YPS I
Sbjct: 82  S-GVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 41/91 (45%), Positives = 58/91 (63%)
 Frame = +1

Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492
           NT+L+++EG   + +  +Y GK   Y+Y+AK +           +  R IWGKVTRPHG 
Sbjct: 30  NTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 81

Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585
           + G VR+KF SNLP ++MG R+RV +YPS I
Sbjct: 82  S-GVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At3g03520.1 68416.m00351 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 523

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 539 WAGRLDLNLARTLPRV-CPCGRVTLPQIARS 450
           WAG LD  + RT PR  CP   VTLP++ R+
Sbjct: 390 WAGTLDAVINRTSPRTDCP---VTLPELPRA 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,307
Number of Sequences: 28952
Number of extensions: 281653
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)