BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H24 (942 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 86 3e-17 At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 86 3e-17 At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 85 6e-17 At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 85 8e-17 At3g03520.1 68416.m00351 phosphoesterase family protein low simi... 30 1.9 >At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) similar to ribosomal protein L33B GB:NP_014877 from [Saccharomyces cerevisiae] Length = 112 Score = 86.2 bits (204), Expect = 3e-17 Identities = 42/91 (46%), Positives = 58/91 (63%) Frame = +1 Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492 NT+L+++EG + + +Y GK Y+Y+AK + + R IWGKVTRPHG Sbjct: 31 NTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 82 Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 + G VRAKF SNLP ++MG R+RV +YPS I Sbjct: 83 S-GVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112 >At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) similar to ribosomal protein L35a GI:57118 from [Rattus norvegicus] Length = 112 Score = 86.2 bits (204), Expect = 3e-17 Identities = 43/91 (47%), Positives = 57/91 (62%) Frame = +1 Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492 NT+L++VEG + +Y GK Y+Y+AK + + R IWGKVTRPHG Sbjct: 31 NTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 82 Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 + G VRAKF SNLP ++MG R+RV +YPS I Sbjct: 83 S-GVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112 >At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) identical to GB:CAB81600 from [Arabidopsis thaliana] Length = 111 Score = 85.0 bits (201), Expect = 6e-17 Identities = 41/91 (45%), Positives = 58/91 (63%) Frame = +1 Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492 NT+L+++EG + + +Y GK Y+Y+AK + + R IWGKVTRPHG Sbjct: 30 NTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 81 Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 + G VR+KF SNLP ++MG R+RV +YPS I Sbjct: 82 S-GVVRSKFTSNLPPKSMGARVRVFMYPSNI 111 >At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ribosomal protein L35a.e.c15, Saccharomyces cerevisiae, PIR:S44069 Length = 111 Score = 84.6 bits (200), Expect = 8e-17 Identities = 41/91 (45%), Positives = 58/91 (63%) Frame = +1 Query: 313 NTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGQ 492 NT+L+++EG + + +Y GK Y+Y+AK + + R IWGKVTRPHG Sbjct: 30 NTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGN 81 Query: 493 TLGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 585 + G VR+KF SNLP ++MG R+RV +YPS I Sbjct: 82 S-GVVRSKFTSNLPPKSMGARVRVFMYPSNI 111 >At3g03520.1 68416.m00351 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family Length = 523 Score = 30.3 bits (65), Expect = 1.9 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 539 WAGRLDLNLARTLPRV-CPCGRVTLPQIARS 450 WAG LD + RT PR CP VTLP++ R+ Sbjct: 390 WAGTLDAVINRTSPRTDCP---VTLPELPRA 417 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,486,307 Number of Sequences: 28952 Number of extensions: 281653 Number of successful extensions: 708 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 700 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2256303936 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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