Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H21
         (962 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.16 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.66 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   1.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   6.2  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   6.2  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 826 PPXPXXPPPPXPPXPPP 876
           PP P  PP P PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 25.4 bits (53), Expect = 0.66
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 501 PXXXPXPSXXXXPPPXPPXPPPXPXAPXXXXXPXPPPAPPPPXXXP 638
           P   P PS      P P  PP           P  PP P PP   P
Sbjct: 149 PKYEPNPSIID---PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 25.0 bits (52), Expect = 0.88
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 544 PPRPXXPPXPXPXPXPP 594
           PP P  PP P P   PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
 Frame = +2

Query: 596 PXPXPXPXXXXXXPPXPPPAXPXPXXXP--PXPPPPGPPXXPP 718
           P   P P      P  PP         P    PP P PP  PP
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 501 PXXXPXPSXXXXPPPXPPXPPPXPXAPXXXXXPXPPPAPPPPXXXP 638
           P   P PS      P P  PP           P  PP P PP   P
Sbjct: 149 PKYEPNPSIID---PGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 863 GGXGGGGXXGXGGGGGG 813
           GG  GGG  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 652 GGGXGGXXXGGGGAGGG 602
           GGG GG   G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 875 GGGXGGXGGGGXXGXGGG 822
           GGG GG G  G  G GGG
Sbjct: 92  GGGRGG-GRDGDRGDGGG 108



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 714 GXXGGPGGGGXGGXXXGXGXAGGG 643
           G      GGG GG   G    GGG
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGGG 108


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 650 PAXPXPXXXPPXPPPPGPPXXPPXXP 727
           P  P        PPPP P   PP  P
Sbjct: 724 PLTPHEAFDVKLPPPPHPHHQPPRNP 749



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 820 PPPPXPXXPPPPXPPXPPP 876
           PPPP P   PP  P    P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 650 PAXPXPXXXPPXPPPPGPPXXPPXXP 727
           P  P        PPPP P   PP  P
Sbjct: 616 PLTPHEAFDVKLPPPPHPHHQPPRNP 641



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 820 PPPPXPXXPPPPXPPXPPP 876
           PPPP P   PP  P    P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 677 PPXPPPPGPPXXP 715
           PP  P PGPP  P
Sbjct: 115 PPLTPSPGPPSHP 127


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +2

Query: 503 PXXAPPXXGXXPPPXPAPPXPXXXXPXPXXPPXPXPXP 616
           P   PP      P   +P         P  PP P P P
Sbjct: 68  PVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +3

Query: 540 PPXPPXPPPXPXAPXXXXXPXPPPAPPPPXXXPP 641
           PP    P P   +P         P  PP    PP
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 538 PPPPRPXXPPXPXPXPXPPXP 600
           PP P+P         P PP P
Sbjct: 250 PPTPKPRPTKVSRRKPRPPRP 270



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 593 PPXPXPXPXXXXXXPPXPP 649
           PP P P P       P PP
Sbjct: 250 PPTPKPRPTKVSRRKPRPP 268


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 680 PXPPPPGPPXXPPXXPP 730
           P  P P PP  PP   P
Sbjct: 23  PHSPEPYPPRCPPIYEP 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.155    0.587 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,894
Number of Sequences: 336
Number of extensions: 5843
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)