Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H19
(1185 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 27 0.37
02_05_0925 - 32768815-32769654 26 1.1
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 25 1.3
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381... 24 5.0
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 29 5.4
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 5.4
06_03_0082 + 16363742-16364632 29 5.4
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 5.4
02_05_0002 - 24849189-24849825,24850267-24850328 29 5.4
01_07_0076 + 40914237-40914315,40914415-40914677 25 5.7
01_06_0604 + 30536172-30537143 25 8.4
05_06_0172 + 26138238-26138474,26138712-26139854 29 9.4
>07_01_0080 + 587674-588510
Length = 278
Score = 26.6 bits (56), Expect(2) = 0.37
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
G G PPPPPPP
Sbjct: 84 GDGMFRRPPPPPPP 97
Score = 25.4 bits (53), Expect(2) = 0.37
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 678 PPPPPPPXXFF 646
PPPPPPP F
Sbjct: 113 PPPPPPPPPLF 123
>02_05_0925 - 32768815-32769654
Length = 279
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GG PPPPPPP
Sbjct: 149 GGRFDHHPPPPPPP 162
Score = 24.2 bits (50), Expect(2) = 1.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 678 PPPPPPPXXF 649
PPPPPPP +
Sbjct: 159 PPPPPPPAHY 168
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 25.4 bits (53), Expect(2) = 1.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 678 PPPPPPPXXF 649
PPPPPPP F
Sbjct: 127 PPPPPPPPPF 136
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 693 GXXXXPPPPPPP 658
G PPPPPPP
Sbjct: 124 GHPPPPPPPPPP 135
>04_04_0760 -
27837170-27837328,27837441-27837504,27837812-27838160,
27838906-27838960,27839489-27839821
Length = 319
Score = 24.2 bits (50), Expect(2) = 5.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 675 PPPPPPXXFFXXKKKKK 625
PPPPPP KK+K
Sbjct: 27 PPPPPPTSSTAAPKKRK 43
Score = 23.8 bits (49), Expect(2) = 5.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 678 PPPPPPP 658
PPPPPPP
Sbjct: 9 PPPPPPP 15
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GGG PPPPPPP
Sbjct: 94 GGGPAQPPPPPPPP 107
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GGG PPPPPPP
Sbjct: 37 GGGAGPTPPPPPPP 50
>06_03_0082 + 16363742-16364632
Length = 296
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GGG PPPPPPP
Sbjct: 163 GGGEERPPPPPPPP 176
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GGG PPPPPPP
Sbjct: 94 GGGWVQLPPPPPPP 107
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GGG PPPPPPP
Sbjct: 211 GGGGHPHPPPPPPP 224
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 699 GGGXXXXPPPPPPP 658
GGG PPPPPPP
Sbjct: 212 GGGHPHPPPPPPPP 225
>01_07_0076 + 40914237-40914315,40914415-40914677
Length = 113
Score = 25.0 bits (52), Expect(2) = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 658 GGGGGGGXXXXPP 696
GGGGGGG PP
Sbjct: 85 GGGGGGGGGDEPP 97
Score = 23.0 bits (47), Expect(2) = 5.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 646 KKXXGGGGGGG 678
K+ GGGGGGG
Sbjct: 76 KRCGGGGGGGG 86
>01_06_0604 + 30536172-30537143
Length = 323
Score = 25.4 bits (53), Expect(2) = 8.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 678 PPPPPPPXXF 649
PPPPPPP F
Sbjct: 42 PPPPPPPLAF 51
Score = 21.8 bits (44), Expect(2) = 8.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 693 GXXXXPPPPPP 661
G PPPPPP
Sbjct: 38 GAAAPPPPPPP 48
>05_06_0172 + 26138238-26138474,26138712-26139854
Length = 459
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 659 GGGGGGGXXXXPPPXXXK 712
GGGGGGG PPP K
Sbjct: 7 GGGGGGGGGGGPPPFLIK 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,502
Number of Sequences: 37544
Number of extensions: 193497
Number of successful extensions: 12615
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7054
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -