SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H19
         (1185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             27   0.37 
02_05_0925 - 32768815-32769654                                         26   1.1  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    25   1.3  
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381...    24   5.0  
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704...    29   5.4  
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    29   5.4  
06_03_0082 + 16363742-16364632                                         29   5.4  
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    29   5.4  
02_05_0002 - 24849189-24849825,24850267-24850328                       29   5.4  
01_07_0076 + 40914237-40914315,40914415-40914677                       25   5.7  
01_06_0604 + 30536172-30537143                                         25   8.4  
05_06_0172 + 26138238-26138474,26138712-26139854                       29   9.4  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 26.6 bits (56), Expect(2) = 0.37
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           G G    PPPPPPP
Sbjct: 84  GDGMFRRPPPPPPP 97



 Score = 25.4 bits (53), Expect(2) = 0.37
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 678 PPPPPPPXXFF 646
           PPPPPPP   F
Sbjct: 113 PPPPPPPPPLF 123


>02_05_0925 - 32768815-32769654
          Length = 279

 Score = 26.2 bits (55), Expect(2) = 1.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GG     PPPPPPP
Sbjct: 149 GGRFDHHPPPPPPP 162



 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 678 PPPPPPPXXF 649
           PPPPPPP  +
Sbjct: 159 PPPPPPPAHY 168


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 25.4 bits (53), Expect(2) = 1.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 678 PPPPPPPXXF 649
           PPPPPPP  F
Sbjct: 127 PPPPPPPPPF 136



 Score = 24.6 bits (51), Expect(2) = 1.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 693 GXXXXPPPPPPP 658
           G    PPPPPPP
Sbjct: 124 GHPPPPPPPPPP 135


>04_04_0760 -
           27837170-27837328,27837441-27837504,27837812-27838160,
           27838906-27838960,27839489-27839821
          Length = 319

 Score = 24.2 bits (50), Expect(2) = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 675 PPPPPPXXFFXXKKKKK 625
           PPPPPP       KK+K
Sbjct: 27  PPPPPPTSSTAAPKKRK 43



 Score = 23.8 bits (49), Expect(2) = 5.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 678 PPPPPPP 658
           PPPPPPP
Sbjct: 9   PPPPPPP 15


>10_03_0012 -
           7037088-7037282,7037453-7037954,7038079-7038081,
           7040633-7041213
          Length = 426

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GGG    PPPPPPP
Sbjct: 94  GGGPAQPPPPPPPP 107


>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GGG    PPPPPPP
Sbjct: 37  GGGAGPTPPPPPPP 50


>06_03_0082 + 16363742-16364632
          Length = 296

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GGG    PPPPPPP
Sbjct: 163 GGGEERPPPPPPPP 176


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GGG    PPPPPPP
Sbjct: 94  GGGWVQLPPPPPPP 107


>02_05_0002 - 24849189-24849825,24850267-24850328
          Length = 232

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GGG    PPPPPPP
Sbjct: 211 GGGGHPHPPPPPPP 224



 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           GGG    PPPPPPP
Sbjct: 212 GGGHPHPPPPPPPP 225


>01_07_0076 + 40914237-40914315,40914415-40914677
          Length = 113

 Score = 25.0 bits (52), Expect(2) = 5.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 658 GGGGGGGXXXXPP 696
           GGGGGGG    PP
Sbjct: 85  GGGGGGGGGDEPP 97



 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 646 KKXXGGGGGGG 678
           K+  GGGGGGG
Sbjct: 76  KRCGGGGGGGG 86


>01_06_0604 + 30536172-30537143
          Length = 323

 Score = 25.4 bits (53), Expect(2) = 8.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 678 PPPPPPPXXF 649
           PPPPPPP  F
Sbjct: 42  PPPPPPPLAF 51



 Score = 21.8 bits (44), Expect(2) = 8.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 693 GXXXXPPPPPP 661
           G    PPPPPP
Sbjct: 38  GAAAPPPPPPP 48


>05_06_0172 + 26138238-26138474,26138712-26139854
          Length = 459

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 659 GGGGGGGXXXXPPPXXXK 712
           GGGGGGG    PPP   K
Sbjct: 7   GGGGGGGGGGGPPPFLIK 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,502
Number of Sequences: 37544
Number of extensions: 193497
Number of successful extensions: 12615
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7054
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -