Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H19
         (1185 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)                   26   0.60 
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   25   1.3  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   24   4.9  

>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
          Length = 593

 Score = 25.8 bits (54), Expect(2) = 0.60
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 699 GGGXXXXPPPPPPP 658
           G G    PPPPPPP
Sbjct: 459 GVGQAPPPPPPPPP 472



 Score = 25.4 bits (53), Expect(2) = 0.60
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 678 PPPPPPPXXF 649
           PPPPPPP  F
Sbjct: 479 PPPPPPPPPF 488


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 25.4 bits (53), Expect(2) = 1.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 678 PPPPPPPXXF 649
           PPPPPPP  F
Sbjct: 197 PPPPPPPPGF 206



 Score = 24.6 bits (51), Expect(2) = 1.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 693 GXXXXPPPPPPP 658
           G    PPPPPPP
Sbjct: 193 GMPPPPPPPPPP 204


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 24.2 bits (50), Expect(2) = 4.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 696 GGXXXXPPPPPP 661
           GG    PPPPPP
Sbjct: 359 GGAAPPPPPPPP 370



 Score = 23.8 bits (49), Expect(2) = 4.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 678 PPPPPPP 658
           PPPPPPP
Sbjct: 374 PPPPPPP 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,712
Number of Sequences: 59808
Number of extensions: 99812
Number of successful extensions: 1954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3657251350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)