Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H19
(1185 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 27 0.23
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 25 1.0
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 25 1.1
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 26 4.9
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 25 5.1
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 25 7.1
At1g18170.1 68414.m02258 immunophilin / FKBP-type peptidyl-proly... 29 7.9
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 24 8.7
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 27.1 bits (57), Expect(2) = 0.23
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 696 GGXXXXPPPPPPP 658
GG PPPPPPP
Sbjct: 324 GGEFHPPPPPPPP 336
Score = 25.4 bits (53), Expect(2) = 0.23
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 678 PPPPPPPXXFF 646
PPPPPPP ++
Sbjct: 332 PPPPPPPVEYY 342
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 25.4 bits (53), Expect(2) = 1.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 678 PPPPPPPXXFF 646
PPPPPPP F
Sbjct: 70 PPPPPPPLPMF 80
Score = 24.6 bits (51), Expect(2) = 1.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 693 GXXXXPPPPPPP 658
G PPPPPPP
Sbjct: 19 GRVPLPPPPPPP 30
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 25.4 bits (53), Expect(2) = 1.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 678 PPPPPPPXXF 649
PPPPPPP F
Sbjct: 46 PPPPPPPPMF 55
Score = 24.6 bits (51), Expect(2) = 1.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 693 GXXXXPPPPPPP 658
G PPPPPPP
Sbjct: 19 GRVPLPPPPPPP 30
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 26.2 bits (55), Expect(2) = 4.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 678 PPPPPPPXXFFXXKK 634
PPPPPPP F K+
Sbjct: 371 PPPPPPPLPQFSNKR 385
Score = 21.4 bits (43), Expect(2) = 4.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 693 GXXXXPPPPPPP 658
G PPPPPP
Sbjct: 362 GISVSAPPPPPP 373
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 25.0 bits (52), Expect(2) = 5.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 658 GGGGGGGXXXXPP 696
GGGGGGG PP
Sbjct: 129 GGGGGGGGGGGPP 141
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 646 KKXXGGGGGGG 678
+K GGGGGGG
Sbjct: 120 QKIGGGGGGGG 130
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 24.6 bits (51), Expect(2) = 7.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 696 GGXXXXPPPPPPP 658
G PPPPPPP
Sbjct: 225 GANGLPPPPPPPP 237
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 675 PPPPPPXXFF 646
PPPPPP F
Sbjct: 242 PPPPPPSGLF 251
>At1g18170.1 68414.m02258 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein similar to
(Peptidyl-prolyl cis-trans isomerase) (PPiase)
(Rotamase) (SP:Q26486) [Spodoptera frugiperda]; contains
Pfam profile: PF00254 FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 247
Score = 28.7 bits (61), Expect = 7.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 678 PPPPPPPXXFFXXKKKKK 625
PPPPPPP +K+KK
Sbjct: 43 PPPPPPPQPLASQQKRKK 60
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 678 PPPPPPP 658
PPPPPPP
Sbjct: 69 PPPPPPP 75
Score = 23.0 bits (47), Expect(2) = 8.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 675 PPPPPPXXFFXXKKKKK 625
PPPPPP F KK
Sbjct: 110 PPPPPPPLHFSSPLIKK 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,864,087
Number of Sequences: 28952
Number of extensions: 99254
Number of successful extensions: 2825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3006606184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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