Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H17
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.38 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 520 KXPPPPGXXGFFFXPPXPXPXKKTPAPGFXGGAXXXPPPXG 642
           K PPPP         P P P    P     GG    PPP G
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +1

Query: 526 PPPPGXXGFFFXPPXPXPXKKTPAPGFXGGAXXXPPP 636
           PPPPG  G    PP P P    PA    G     P P
Sbjct: 765 PPPPGVAGAGPPPPPPPP----PAVSAGGSRYYAPAP 797


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 562  PPXPXPXKKTPAPGFXGGAXXXPPP 636
            PP P P    P P    GA   PPP
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +1

Query: 562  PPXPXPXKKTPAPGFXGGAXXXPPPXGXXFFP-PKTGXXP 678
            PP P P +  P P    G    PPP      P P  G  P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,144
Number of Sequences: 5004
Number of extensions: 12328
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)