Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H17
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   8.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = +1

Query: 565 PXPXPXKKTPAP--GFXGGAXXXPPPXGXXFFPP 660
           P P P +   AP  G        PPP G    PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 532 PPGXXGFFFXPPXPXPXKKTPAPGFXG 612
           PPG     +  P P   +K P  G  G
Sbjct: 71  PPGPKDLVYLEPSPPFCEKNPKLGILG 97


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 532 PPGXXGFFFXPPXPXPXKKTPAPGFXG 612
           PPG     +  P P   +K P  G  G
Sbjct: 72  PPGPKDLVYLEPSPPFCEKNPKLGILG 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,046
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)