Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H15
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   3.6  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   3.6  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   8.4  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   8.4  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 307 EEIIANAFV-HHRTRHLETQVHGRAGHKP 224
           EE++   F   H  R L T+ H R+ H+P
Sbjct: 482 EEVLREVFAPKHARRRLGTRFHSRSSHRP 510


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 535 DFLVACASMADAMRHYSXQHIADLLS 612
           ++LVA    AD +R Y  Q +AD+L+
Sbjct: 22  NYLVANKDAADLLRRYHRQEVADILN 47


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = +2

Query: 392 QIRIFWRYLY--WWTMR 436
           +IR +WRYL+  WW ++
Sbjct: 73  KIRFWWRYLFYGWWNLK 89


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 737 KIDLLSMIVISEVAXSRVAXLDSWPVCVSTDDANAILLHAIXGKIIKN*NAHR 895
           K+DL S+   S  +      L    + V  D+   ++L    GKI+    AH+
Sbjct: 187 KLDLTSLFSFSSKSQLNALCLYQSKLIVGRDNGTVLVLDTSDGKILHEFTAHK 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,195
Number of Sequences: 5004
Number of extensions: 65768
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)