Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H15
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0028 + 27782072-27782171,27782427-27782620                       32   0.54 
11_08_0013 + 27629086-27629185,27629441-27629634                       32   0.54 
05_02_0046 + 6004240-6004656                                           31   1.6  
11_01_0545 + 4308167-4308496                                           30   2.2  
05_03_0244 + 10857139-10857516                                         30   2.9  
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     28   8.8  

>11_08_0028 + 27782072-27782171,27782427-27782620
          Length = 97

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 175 GLNTNKTSIXLRNCDFTACDQLCRELGFPSGACDGE 282
           G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 35  GYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 486 LENCDMRECDXSCRRIGFPGGVC 554
           L NCDM +C   C+  GF GG+C
Sbjct: 45  LVNCDMNKCMSDCQIKGFNGGLC 67


>11_08_0013 + 27629086-27629185,27629441-27629634
          Length = 97

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 175 GLNTNKTSIXLRNCDFTACDQLCRELGFPSGACDGE 282
           G     + + L NCD   C   C+  GF  G CDGE
Sbjct: 35  GYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 486 LENCDMRECDXSCRRIGFPGGVC 554
           L NCDM +C   C+  GF GG+C
Sbjct: 45  LVNCDMNKCMSDCQIKGFNGGLC 67


>05_02_0046 + 6004240-6004656
          Length = 138

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 644 RLIASSAITIFERRSAICCXL*CRIASAXDAHAT 543
           RL+  S + IF RR    C +  R+ +A  AHAT
Sbjct: 47  RLVRESPVVIFARRGCCMCHVMRRLLAAVGAHAT 80


>11_01_0545 + 4308167-4308496
          Length = 109

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 181 NTNKTSIXLRNCDFTACDQLCRELGF-PSGAC 273
           +T  T I +  CD T C   CR+LG+ P  AC
Sbjct: 56  DTYATCIPVAACDDTGCAIRCRDLGYNPGSAC 87


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 480 STLENCDMRECDXSCRRIGFPGGVCVXGRCNATL*PTTYXXXXLKDCNSRGCDQSCR--R 653
           S+  +C  +     C  +G PG  C  GRC  T           + C   GC+++C+  R
Sbjct: 39  SSFYSCSKKSAAAVCLAVGSPGATCCGGRCVDT-------GASGEHCG--GCNKACKHGR 89

Query: 654 IGFPGRCV 677
               GRCV
Sbjct: 90  SCCGGRCV 97


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 592 HIADLLSKIVI-AEDAISRVAELDFLAGVCVXGRCKCDIIAXNNIADLDEDRSSLNDCNI 768
           H  DL++++++ A D    V  L     +C+    +  ++  N++  L +DR    +  I
Sbjct: 221 HKVDLVARMLVEACDLGENVLILGHNQSLCLRAD-EYPLLKANHVY-LSDDR----ELYI 274

Query: 769 RGCXQSCRXIGFLAGVCVXGRCKCDIIARNXWENY 873
           +GC   CR IG      +   C  +I++   W N+
Sbjct: 275 KGCKNGCRDIGVFN---LENNCAEEIVSPQLWSNW 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,750,635
Number of Sequences: 37544
Number of extensions: 416285
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)