Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H15
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    30   2.6  
Z19154-6|CAC35885.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 670 GVCVXGRCKCDIIAXNNIADLDEDRS-SLNDCNIRGCXQSCRXIGFLAGVCVXGRCKC 840
           GVC  GRC+C     N  A+ +E  S    +C+   C +  R I    G C  G+C C
Sbjct: 539 GVCNCGRCEC-----NPRANPEEQISGEFCECDNFNCPRHDRKICAEHGECNCGKCIC 591


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 670 GVCVXGRCKCDIIAXNNIADLDEDRS-SLNDCNIRGCXQSCRXIGFLAGVCVXGRCKC 840
           GVC  GRC+C     N  A+ +E  S    +C+   C +  R I    G C  G+C C
Sbjct: 539 GVCNCGRCEC-----NPRANPEEQISGEFCECDNFNCPRHDRKICAEHGECNCGKCIC 591


>Z19154-6|CAC35885.2|  388|Caenorhabditis elegans Hypothetical
           protein C40H1.7 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 444 FHIRIVHQYRYRQKIRICDTIDHTLT*YNPVEVVWLSVFVRE 319
           +   I+H + Y  ++   D ID+T T Y+P   VW +  +RE
Sbjct: 255 YSYHIIHAHDYAPRLPFFDNIDNT-TLYHPRSEVWYNNDMRE 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,391,048
Number of Sequences: 27780
Number of extensions: 393533
Number of successful extensions: 1019
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)